RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 RHOBTB2Q9BYZ6 727 aa15.77■□□□□ 0.12
COL9A3-209ENST00000469852 CDH9Q9ULB4 789 aa15.77■□□□□ 0.12
COL9A3-209ENST00000469852 MTCL1Q9Y4B5 1905 aaKnown RBP15.76■□□□□ 0.11
COL9A3-209ENST00000469852 MTMR11A4FU01 709 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 ABLIM3O94929 683 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 SEC24AO95486 1093 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 GLP2RO95838 553 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 ADH1AP07327 375 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 PTPN1P18031 435 aaKnown RBP15.76■□□□□ 0.11
COL9A3-209ENST00000469852 PCSK1P29120 753 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 MFAP3P55082 362 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 CREMQ03060 361 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 GPR17Q13304 367 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 RAPGEF1Q13905 1077 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 KCNC3Q14003 757 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 MDH1BQ5I0G3 518 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 FAM171BQ6P995 826 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 TMEM270Q6UE05 265 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 UNC93AQ86WB7 457 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 C12orf29Q8N999 325 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 B3GALNT2Q8NCR0 500 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 NEK11Q8NG66 645 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 SHC3Q92529 594 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 TTYH3Q9C0H2 523 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 ACP6Q9NPH0 428 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 NLRC4Q9NPP4 1024 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 PCDHB4Q9Y5E5 795 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 HCFC2Q9Y5Z7 792 aa15.76■□□□□ 0.11
COL9A3-209ENST00000469852 FOXN3O00409 490 aaPredicted RBP15.75■□□□□ 0.11
COL9A3-209ENST00000469852 ZNF132P52740 706 aa15.75■□□□□ 0.11
COL9A3-209ENST00000469852 TSPY1Q01534 308 aa15.75■□□□□ 0.11
COL9A3-209ENST00000469852 DRAP1Q14919 205 aaPredicted RBP15.75■□□□□ 0.11
COL9A3-209ENST00000469852 CCDC85BQ15834 202 aaPredicted RBP15.75■□□□□ 0.11
COL9A3-209ENST00000469852 CRYBG2Q8N1P7 616 aa15.75■□□□□ 0.11
COL9A3-209ENST00000469852 ATAD1Q8NBU5 361 aa15.75■□□□□ 0.11
COL9A3-209ENST00000469852 RBBP8NLQ8NC74 664 aaPredicted RBP15.75■□□□□ 0.11
COL9A3-209ENST00000469852 MYLPFQ96A32 169 aa15.75■□□□□ 0.11
COL9A3-209ENST00000469852 TMEM176AQ96HP8 235 aa15.75■□□□□ 0.11
COL9A3-209ENST00000469852 ZSWIM1Q9BR11 485 aa15.75■□□□□ 0.11
COL9A3-209ENST00000469852 NT5C1AQ9BXI3 368 aa15.75■□□□□ 0.11
COL9A3-209ENST00000469852 OXCT2Q9BYC2 517 aaPredicted RBP15.75■□□□□ 0.11
COL9A3-209ENST00000469852 TRIM5Q9C035 493 aa15.75■□□□□ 0.11
COL9A3-209ENST00000469852 FAM49BQ9NUQ9 324 aa15.75■□□□□ 0.11
COL9A3-209ENST00000469852 CNTN6Q9UQ52 1028 aa15.75■□□□□ 0.11
COL9A3-209ENST00000469852 F8VZ95 297 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 CLDN5O00501 218 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 CBFA2T2O43439 604 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 SOAT2O75908 522 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 GLUD1P00367 558 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 KRT5P13647 590 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 CCDC130P13994 396 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 ZNF75DP51815 510 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 JAM2P57087 298 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 YWHAEP62258 255 aaKnown RBP15.74■□□□□ 0.11
COL9A3-209ENST00000469852 ADCY1Q08828 1119 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 UVSSAQ2YD98 709 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 PAQR9Q6ZVX9 377 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 ENOSF1Q7L5Y1 443 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 VSTM4Q8IW00 320 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 DCP1BQ8IZD4 617 aaKnown RBP15.74■□□□□ 0.11
COL9A3-209ENST00000469852 ZNF461Q8TAF7 563 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 MYCBPAPQ8TBZ2 947 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 TFAP2BQ92481 460 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 PCED1BQ96HM7 432 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 B3GNT5Q9BYG0 378 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 PRDM6Q9NQX0 595 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 TMEM30AQ9NV96 361 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 AFF4Q9UHB7 1163 aaKnown RBP15.74■□□□□ 0.11
COL9A3-209ENST00000469852 FBXW11Q9UKB1 542 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 SLC27A5Q9Y2P5 690 aa15.74■□□□□ 0.11
COL9A3-209ENST00000469852 TTC28Q96AY4 2481 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 FSD2A1L4K1 749 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 ATF2P15336 505 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 RFX1P22670 979 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 USP8P40818 1118 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 CACNA2D1P54289 1103 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 FUKQ8N0W3 1084 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 TTC39CQ8N584 583 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 EFHBQ8N7U6 833 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 KREMEN2Q8NCW0 462 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 PPM1EQ8WY54 764 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 BAP1Q92560 729 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 JAKMIP2Q96AA8 810 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 TNIP3Q96KP6 325 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 CDCA3Q99618 268 aaPredicted RBP15.73■□□□□ 0.11
COL9A3-209ENST00000469852 STK33Q9BYT3 514 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 ZNF518BQ9C0D4 1074 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 FAM124BQ9H5Z6 455 aaPredicted RBP15.73■□□□□ 0.11
COL9A3-209ENST00000469852 MAN1C1Q9NR34 630 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 ABI2Q9NYB9 513 aaPredicted RBP15.73■□□□□ 0.11
COL9A3-209ENST00000469852 CEP72Q9P209 647 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 MUC3AQ02505 3323 aa15.73■□□□□ 0.11
COL9A3-209ENST00000469852 XIRP2A4UGR9 3374 aa15.72■□□□□ 0.11
COL9A3-209ENST00000469852 CYP26A1O43174 497 aa15.72■□□□□ 0.11
COL9A3-209ENST00000469852 TRIM21P19474 475 aaKnown RBP15.72■□□□□ 0.11
COL9A3-209ENST00000469852 CYP2F1P24903 491 aa15.72■□□□□ 0.11
COL9A3-209ENST00000469852 BRD2P25440 801 aaKnown RBP15.72■□□□□ 0.11
COL9A3-209ENST00000469852 SSTR3P32745 418 aaPredicted RBP15.72■□□□□ 0.11
COL9A3-209ENST00000469852 CLCN1P35523 988 aa15.72■□□□□ 0.11
COL9A3-209ENST00000469852 GPR15P49685 360 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms