RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 WDR49Q8IV35 697 aa17.52■□□□□ 0.4
COL9A3-208ENST00000469802 ADGRF2Q8IZF7 708 aa17.52■□□□□ 0.4
COL9A3-208ENST00000469802 FAM200AQ8TCP9 573 aa17.52■□□□□ 0.4
COL9A3-208ENST00000469802 NOC3LQ8WTT2 800 aaKnown RBP17.52■□□□□ 0.4
COL9A3-208ENST00000469802 ANKRD36BP1Q96IX9 119 aa17.52■□□□□ 0.4
COL9A3-208ENST00000469802 TASP1Q9H6P5 420 aa17.52■□□□□ 0.4
COL9A3-208ENST00000469802 KIAA1586Q9HCI6 787 aa17.52■□□□□ 0.4
COL9A3-208ENST00000469802 PRMT8Q9NR22 394 aaPredicted RBP17.52■□□□□ 0.4
COL9A3-208ENST00000469802 SPATA6Q9NWH7 488 aaPredicted RBP17.52■□□□□ 0.4
COL9A3-208ENST00000469802 DDX43Q9NXZ2 648 aaKnown RBP17.52■□□□□ 0.4
COL9A3-208ENST00000469802 SNX9Q9Y5X1 595 aa17.52■□□□□ 0.4
COL9A3-208ENST00000469802 PIAS3Q9Y6X2 628 aa17.52■□□□□ 0.4
COL9A3-208ENST00000469802 EP300Q09472 2414 aaPredicted RBP17.51■□□□□ 0.39
COL9A3-208ENST00000469802 NCAM2O15394 837 aa17.51■□□□□ 0.39
COL9A3-208ENST00000469802 KRT19P08727 400 aa17.51■□□□□ 0.39
COL9A3-208ENST00000469802 SNRPFP62306 86 aaKnown RBP17.51■□□□□ 0.39
COL9A3-208ENST00000469802 MYL7Q01449 175 aa17.51■□□□□ 0.39
COL9A3-208ENST00000469802 SNRNP35Q16560 246 aaKnown RBP17.51■□□□□ 0.39
COL9A3-208ENST00000469802 CCDC142Q17RM4 750 aa17.51■□□□□ 0.39
COL9A3-208ENST00000469802 SOWAHAQ2M3V2 549 aa17.51■□□□□ 0.39
COL9A3-208ENST00000469802 ARHGAP15Q53QZ3 475 aa17.51■□□□□ 0.39
COL9A3-208ENST00000469802 GIPC2Q8TF65 315 aa17.51■□□□□ 0.39
COL9A3-208ENST00000469802 KBTBD7Q8WVZ9 684 aa17.51■□□□□ 0.39
COL9A3-208ENST00000469802 NELL1Q92832 810 aa17.51■□□□□ 0.39
COL9A3-208ENST00000469802 MSANTD3Q96H12 275 aa17.51■□□□□ 0.39
COL9A3-208ENST00000469802 BLZF1Q9H2G9 400 aa17.51■□□□□ 0.39
COL9A3-208ENST00000469802 CHRDQ9H2X0 955 aa17.51■□□□□ 0.39
COL9A3-208ENST00000469802 FAM13BQ9NYF5 915 aa17.51■□□□□ 0.39
COL9A3-208ENST00000469802 ZMYM5Q9UJ78 669 aa17.51■□□□□ 0.39
COL9A3-208ENST00000469802 RCOR1Q9UKL0 485 aa17.51■□□□□ 0.39
COL9A3-208ENST00000469802 CFAP45Q9UL16 551 aa17.51■□□□□ 0.39
COL9A3-208ENST00000469802 FRYLO94915 3013 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 KIAA1549LQ6ZVL6 1849 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 PVALEFA0A1B0GWK0 134 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 LAMTOR5O43504 91 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 HCRTO43612 131 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 LMNAP02545 664 aaKnown RBP17.5■□□□□ 0.39
COL9A3-208ENST00000469802 TNNC2P02585 160 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 F11P03951 625 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 ACAT1P24752 427 aaKnown RBP17.5■□□□□ 0.39
COL9A3-208ENST00000469802 LHX1P48742 406 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 GPR15P49685 360 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 NLRP12P59046 1061 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 MYO1EQ12965 1108 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 CUL4BQ13620 913 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 DUOXA2Q1HG44 320 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 CFAP221Q4G0U5 840 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 DPH6Q7L8W6 267 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 C12orf56Q8IXR9 622 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 ADSSL1Q8N142 457 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 HPDLQ96IR7 371 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 GCNAQ96QF7 691 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 IER2Q9BTL4 223 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 PI4K2AQ9BTU6 479 aa17.5■□□□□ 0.39
COL9A3-208ENST00000469802 GZF1Q9H116 711 aaPredicted RBP17.5■□□□□ 0.39
COL9A3-208ENST00000469802 ACTN4O43707 911 aaKnown RBP17.49■□□□□ 0.39
COL9A3-208ENST00000469802 TADA3O75528 432 aa17.49■□□□□ 0.39
COL9A3-208ENST00000469802 PCSK1P29120 753 aa17.49■□□□□ 0.39
COL9A3-208ENST00000469802 CYP24A1Q07973 514 aa17.49■□□□□ 0.39
COL9A3-208ENST00000469802 MTAPQ13126 283 aa17.49■□□□□ 0.39
COL9A3-208ENST00000469802 PSMD6Q15008 389 aa17.49■□□□□ 0.39
COL9A3-208ENST00000469802 ARHGAP29Q52LW3 1261 aa17.49■□□□□ 0.39
COL9A3-208ENST00000469802 MAMSTRQ6ZN01 415 aa17.49■□□□□ 0.39
COL9A3-208ENST00000469802 GPIHBP1Q8IV16 184 aa17.49■□□□□ 0.39
COL9A3-208ENST00000469802 NELFCDQ8IXH7 590 aa17.49■□□□□ 0.39
COL9A3-208ENST00000469802 YAF2Q8IY57 180 aa17.49■□□□□ 0.39
COL9A3-208ENST00000469802 STKLD1Q8NE28 680 aa17.49■□□□□ 0.39
COL9A3-208ENST00000469802 FAM3CQ92520 227 aa17.49■□□□□ 0.39
COL9A3-208ENST00000469802 TRMT2BQ96GJ1 504 aaKnown RBP17.49■□□□□ 0.39
COL9A3-208ENST00000469802 FUBP3Q96I24 572 aaKnown RBP eCLIP17.49■□□□□ 0.39
COL9A3-208ENST00000469802 CGRRF1Q99675 332 aa17.49■□□□□ 0.39
COL9A3-208ENST00000469802 SLC46A2Q9BY10 475 aa17.49■□□□□ 0.39
COL9A3-208ENST00000469802 CGNQ9P2M7 1197 aaKnown RBP17.49■□□□□ 0.39
COL9A3-208ENST00000469802 GTF3C4Q9UKN8 822 aa17.49■□□□□ 0.39
COL9A3-208ENST00000469802 NDRG2Q9UN36 371 aaKnown RBP17.49■□□□□ 0.39
COL9A3-208ENST00000469802 MYO16Q9Y6X6 1858 aa17.49■□□□□ 0.39
COL9A3-208ENST00000469802 SOBPA7XYQ1 873 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 TULP1O00294 542 aaPredicted RBP17.48■□□□□ 0.39
COL9A3-208ENST00000469802 KLRC4O43908 158 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 PRPF40AO75400 957 aaKnown RBP17.48■□□□□ 0.39
COL9A3-208ENST00000469802 NOL4O94818 638 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 SLFN14P0C7P3 912 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 CSH1P0DML2 217 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 CSH2P0DML3 217 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 CHRNB1P11230 501 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 TDGF1P13385 188 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 CYP2F1P24903 491 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 DDX6P26196 483 aaKnown RBP eCLIP17.48■□□□□ 0.39
COL9A3-208ENST00000469802 AFMP43652 599 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 TAF12Q16514 161 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 FAM171BQ6P995 826 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 C1orf228Q6PIY5 440 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 HS2ST1Q7LGA3 356 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 TRAPPC11Q7Z392 1133 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 GRAMD1CQ8IYS0 662 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 CMTM8Q8IZV2 173 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 XXYLT1Q8NBI6 393 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 ZBTB44Q8NCP5 570 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 BPIFB1Q8TDL5 484 aa17.48■□□□□ 0.39
COL9A3-208ENST00000469802 CSGALNACT1Q8TDX6 532 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms