RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 MRE11P49959 708 aa16.17■□□□□ 0.18
NPHP4-205ENST00000466897 GSE1Q14687 1217 aa16.17■□□□□ 0.18
NPHP4-205ENST00000466897 DUSP6Q16828 381 aa16.17■□□□□ 0.18
NPHP4-205ENST00000466897 RTL10Q7L3V2 364 aa16.17■□□□□ 0.18
NPHP4-205ENST00000466897 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.17■□□□□ 0.18
NPHP4-205ENST00000466897 RBBP8NLQ8NC74 664 aaPredicted RBP16.17■□□□□ 0.18
NPHP4-205ENST00000466897 FUBP3Q96I24 572 aaKnown RBP eCLIP16.17■□□□□ 0.18
NPHP4-205ENST00000466897 SPAG5Q96R06 1193 aa16.17■□□□□ 0.18
NPHP4-205ENST00000466897 GAS2L1Q99501 681 aaPredicted RBP16.17■□□□□ 0.18
NPHP4-205ENST00000466897 DPEP3Q9H4B8 488 aa16.17■□□□□ 0.18
NPHP4-205ENST00000466897 NLRC4Q9NPP4 1024 aa16.17■□□□□ 0.18
NPHP4-205ENST00000466897 CRTAC1Q9NQ79 661 aa16.17■□□□□ 0.18
NPHP4-205ENST00000466897 AFF4Q9UHB7 1163 aaKnown RBP16.17■□□□□ 0.18
NPHP4-205ENST00000466897 CAPN11Q9UMQ6 739 aa16.17■□□□□ 0.18
NPHP4-205ENST00000466897 MTCH2Q9Y6C9 303 aa16.17■□□□□ 0.18
NPHP4-205ENST00000466897 FOXN3O00409 490 aaPredicted RBP16.16■□□□□ 0.18
NPHP4-205ENST00000466897 HCRTO43612 131 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 GYPCP04921 128 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 CPB1P15086 417 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 ATF2P15336 505 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 RPL17P18621 184 aaKnown RBP16.16■□□□□ 0.18
NPHP4-205ENST00000466897 SOX5P35711 763 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 STAT1P42224 750 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 CLCN4P51793 760 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 BPIFB4P59827 614 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 ARID5BQ14865 1188 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 STILQ15468 1287 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 MEA1Q16626 185 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 PTPN21Q16825 1174 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 CFAP221Q4G0U5 840 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 ARHGAP17Q68EM7 881 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 LILRA6Q6PI73 481 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 C4orf50Q6ZRC1 276 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 ACOT1Q86TX2 421 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 LRRTM3Q86VH5 581 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 SPPL2BQ8TCT7 592 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 HDAC7Q8WUI4 952 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 TMEM209Q96SK2 561 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 DPP7Q9UHL4 492 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 PCDHGC5Q9Y5F6 944 aa16.16■□□□□ 0.18
NPHP4-205ENST00000466897 PRRC2BQ5JSZ5 2229 aaKnown RBP16.15■□□□□ 0.18
NPHP4-205ENST00000466897 MYBPHLA2RUH7 354 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 MTMR11A4FU01 709 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 RNF225M0QZC1 329 aaPredicted RBP16.15■□□□□ 0.18
NPHP4-205ENST00000466897 CLASP2O75122 1294 aaKnown RBP16.15■□□□□ 0.18
NPHP4-205ENST00000466897 ATP2C2O75185 946 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 ADCY5O95622 1261 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 GLUD1P00367 558 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 TPM1P09493 284 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 VDRP11473 427 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 KRT5P13647 590 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 KLRC2P26717 231 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 CA8P35219 290 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 PSMC1P62191 440 aaKnown RBP16.15■□□□□ 0.18
NPHP4-205ENST00000466897 ZBED6P86452 979 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 TBX2Q13207 712 aaPredicted RBP16.15■□□□□ 0.18
NPHP4-205ENST00000466897 KCNC3Q14003 757 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 ADGRE1Q14246 886 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 SLC39A12Q504Y0 691 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 ZNF394Q53GI3 561 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 ADGRD2Q7Z7M1 963 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 ZNF397Q8NF99 534 aaPredicted RBP16.15■□□□□ 0.18
NPHP4-205ENST00000466897 SLC22A17Q8WUG5 538 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 SYN2Q92777 582 aaPredicted RBP16.15■□□□□ 0.18
NPHP4-205ENST00000466897 PCED1BQ96HM7 432 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 HNRNPABQ99729 332 aaKnown RBP16.15■□□□□ 0.18
NPHP4-205ENST00000466897 TLE6Q9H808 572 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 AIPL1Q9NZN9 384 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 FBXW11Q9UKB1 542 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 GTF3C4Q9UKN8 822 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 ATP8B3O60423 1300 aa16.15■□□□□ 0.18
NPHP4-205ENST00000466897 SZT2Q5T011 3432 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 TGM5O43548 720 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 OR4Q2P0C623 313 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 CCDC172P0C7W6 258 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 CLCN1P35523 988 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 MAGEA11P43364 429 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 PTK2Q05397 1052 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 MDH1BQ5I0G3 518 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 ELMSAN1Q6PJG2 1045 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 RNF19BQ6ZMZ0 732 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 TCEAL8Q8IYN2 117 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 DEFB123Q8N688 67 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 MYLPFQ96A32 169 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 CEP295NLQ96MC4 621 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 PLEKHA4Q9H4M7 779 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 TMLHEQ9NVH6 421 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 LUC7L2Q9Y383 392 aaKnown RBP16.14■□□□□ 0.17
NPHP4-205ENST00000466897 PCDHB5Q9Y5E4 795 aa16.14■□□□□ 0.17
NPHP4-205ENST00000466897 ZNF638Q14966 1978 aaKnown RBP16.13■□□□□ 0.17
NPHP4-205ENST00000466897 LRRC53A6NM62 1247 aa16.13■□□□□ 0.17
NPHP4-205ENST00000466897 CYP26A1O43174 497 aa16.13■□□□□ 0.17
NPHP4-205ENST00000466897 MED7O43513 233 aa16.13■□□□□ 0.17
NPHP4-205ENST00000466897 NCK2O43639 380 aa16.13■□□□□ 0.17
NPHP4-205ENST00000466897 PAPLNO95428 1278 aa16.13■□□□□ 0.17
NPHP4-205ENST00000466897 VNN2O95498 520 aa16.13■□□□□ 0.17
NPHP4-205ENST00000466897 FERP16591 822 aa16.13■□□□□ 0.17
NPHP4-205ENST00000466897 GNA15P30679 374 aa16.13■□□□□ 0.17
NPHP4-205ENST00000466897 HNRNPH3P31942 346 aaKnown RBP16.13■□□□□ 0.17
NPHP4-205ENST00000466897 ORC1Q13415 861 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms