RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 VPS45Q9NRW7 570 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 CNTN3Q9P232 1028 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 LOC400499M0QZD8 3231 aa12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 KIF26AQ9ULI4 1882 aaPredicted RBP12.87□□□□□ -0.35
SQSTM1-206ENST00000466342 KIAA0391O15091 583 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 ADAM12O43184 909 aa12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 KIF20AO95235 890 aa12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 ZIC2O95409 532 aaPredicted RBP12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 CLTAP09496 248 aa12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 CEACAM1P13688 526 aa12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 CEBPBP17676 345 aa12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 PTPN2P17706 415 aa12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 RPL9P32969 192 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 TNFSF9P41273 254 aa12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 SNRPFP62306 86 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 FAM78AQ5JUQ0 283 aa12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 ZNF658Q5TYW1 1059 aaPredicted RBP12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 DAB2IPQ5VWQ8 1189 aa12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 ARMCX5Q6P1M9 558 aa12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 CD300LGQ6UXG3 332 aa12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 KBTBD6Q86V97 674 aa12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 GAB3Q8WWW8 586 aa12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 ZMAT2Q96NC0 199 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 CLSTN2Q9H4D0 955 aa12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 SMOC1Q9H4F8 434 aa12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 PLEKHA5Q9HAU0 1116 aa12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 RBM12Q9NTZ6 932 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 CGNQ9P2M7 1197 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 CPSF3Q9UKF6 684 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 AGO2Q9UKV8 859 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 ASH1LQ9NR48 2969 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 FLNBO75369 2602 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-206ENST00000466342 ATG2BQ96BY7 2078 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 C4orf47A7E2U8 309 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 NRG2O14511 850 aaPredicted RBP12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 MEFVO15553 781 aaPredicted RBP12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 RPP40O75818 363 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 LDHAP00338 332 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 CXCL8P10145 99 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 OR1D2P34982 312 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 MPLP40238 635 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 ACOT2P49753 483 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 POU5F1Q01860 360 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 SOX4Q06945 474 aaPredicted RBP12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 CAMK4Q16566 473 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 SLC10A6Q3KNW5 377 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 DGKKQ5KSL6 1271 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 SH3PXD2AQ5TCZ1 1133 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 C1orf228Q6PIY5 440 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 VITQ6UXI7 678 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 ANKS3Q6ZW76 656 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 HS2ST1Q7LGA3 356 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 GUF1Q8N442 669 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 GOLGA5Q8TBA6 731 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 GPT2Q8TD30 523 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 MSANTD3Q96H12 275 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 ZC3H10Q96K80 434 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 ASB16Q96NS5 453 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 CBWD1Q9BRT8 395 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 GTPBP4Q9BZE4 634 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 NUP62CLQ9H1M0 184 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 KCTD10Q9H3F6 313 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 RPF1Q9H9Y2 349 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 GOLGA2P5Q9HBQ8 144 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 AGPAT3Q9NRZ7 376 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 C2orf42Q9NWW7 574 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 MTRRQ9UBK8 725 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 MAN1B1Q9UKM7 699 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 MAPK8IP1Q9UQF2 711 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 BACE2Q9Y5Z0 518 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 PCNX2A6NKB5 2137 aa12.85□□□□□ -0.35
SQSTM1-206ENST00000466342 CCDC163A0A0D9SF12 145 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 TTC26A0AVF1 554 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 PODXLO00592 558 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 ZNF263O14978 683 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 MICAL2O94851 1124 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 MBD3O95983 291 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 ADRB2P07550 413 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 IGFBP6P24592 240 aaPredicted RBP12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 HOXC13P31276 330 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 MCM4P33991 863 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 BRCC3P46736 316 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 PPP2R3AQ06190 1150 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 ENOX2Q16206 610 aaKnown RBP12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 COBLL1Q53SF7 1204 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 PRSS36Q5K4E3 855 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 CRELD2Q6UXH1 353 aaPredicted RBP12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 Q6ZS52 159 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 MFSD6LQ8IWD5 586 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 C12orf56Q8IXR9 622 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 SMYD4Q8IYR2 804 aaPredicted RBP12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 GPD1LQ8N335 351 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 C3orf58Q8NDZ4 430 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 DEPDC1BQ8WUY9 529 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 SAAL1Q96ER3 474 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 TSPAN18Q96SJ8 248 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 EDEM2Q9BV94 578 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 PCIF1Q9H4Z3 704 aa12.84□□□□□ -0.35
SQSTM1-206ENST00000466342 HSPBP1Q9NZL4 362 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms