RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 F11P03951 625 aa17.33■□□□□ 0.36
COL7A1-204ENST00000462475 IDEP14735 1019 aa17.33■□□□□ 0.36
COL7A1-204ENST00000462475 PDCP20941 246 aa17.33■□□□□ 0.36
COL7A1-204ENST00000462475 ARHGAP8P85298 464 aa17.33■□□□□ 0.36
COL7A1-204ENST00000462475 TSPY1Q01534 308 aa17.33■□□□□ 0.36
COL7A1-204ENST00000462475 SPEM2Q0P670 501 aa17.33■□□□□ 0.36
COL7A1-204ENST00000462475 SIM2Q14190 667 aaPredicted RBP17.33■□□□□ 0.36
COL7A1-204ENST00000462475 ITPRIPL2Q3MIP1 535 aa17.33■□□□□ 0.36
COL7A1-204ENST00000462475 MAB21L3Q8N8X9 362 aa17.33■□□□□ 0.36
COL7A1-204ENST00000462475 CXorf38Q8TB03 319 aa17.33■□□□□ 0.36
COL7A1-204ENST00000462475 USP13Q92995 863 aaPredicted RBP17.33■□□□□ 0.36
COL7A1-204ENST00000462475 FAM83CQ9BQN1 747 aa17.33■□□□□ 0.36
COL7A1-204ENST00000462475 CBWD1Q9BRT8 395 aa17.33■□□□□ 0.36
COL7A1-204ENST00000462475 HPS4Q9NQG7 708 aa17.33■□□□□ 0.36
COL7A1-204ENST00000462475 CDV3Q9UKY7 258 aaKnown RBP17.33■□□□□ 0.36
COL7A1-204ENST00000462475 FRMD3A2A2Y4 597 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 HCRTO43612 131 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 PRPF40AO75400 957 aaKnown RBP17.32■□□□□ 0.36
COL7A1-204ENST00000462475 SYT1P21579 422 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 ACAT1P24752 427 aaKnown RBP17.32■□□□□ 0.36
COL7A1-204ENST00000462475 AVPR1AP37288 418 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 BFSP1Q12934 665 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 INTS6LQ5JSJ4 861 aaKnown RBP17.32■□□□□ 0.36
COL7A1-204ENST00000462475 TXNDC8Q6A555 127 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 TRIM68Q6AZZ1 485 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 PKN3Q6P5Z2 889 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 LONP2Q86WA8 852 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 OSTM1Q86WC4 334 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 SYCP3Q8IZU3 236 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 LEO1Q8WVC0 666 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-204ENST00000462475 CHFRQ96EP1 664 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 USP28Q96RU2 1077 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 PANK2Q9BZ23 570 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 GKN1Q9NS71 199 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 THG1LQ9NWX6 298 aaKnown RBP17.32■□□□□ 0.36
COL7A1-204ENST00000462475 DDX43Q9NXZ2 648 aaKnown RBP17.32■□□□□ 0.36
COL7A1-204ENST00000462475 ZMYM5Q9UJ78 669 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 MAGED2Q9UNF1 606 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-204ENST00000462475 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.32■□□□□ 0.36
COL7A1-204ENST00000462475 KIF26AQ9ULI4 1882 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-204ENST00000462475 SPTBN2O15020 2390 aa17.32■□□□□ 0.36
COL7A1-204ENST00000462475 OTOL1A6NHN0 477 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-204ENST00000462475 HUS1O60921 280 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 TADA3O75528 432 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 RETP07949 1114 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 SDHBP21912 280 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 GARTP22102 1010 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 STAT6P42226 847 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 NFE2Q16621 373 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-204ENST00000462475 DDR2Q16832 855 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 CCDC73Q6ZRK6 1079 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 CSGALNACT2Q8N6G5 542 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 LRRC52Q8N7C0 313 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 NOC3LQ8WTT2 800 aaKnown RBP17.31■□□□□ 0.36
COL7A1-204ENST00000462475 PKMYT1Q99640 499 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 ACBD6Q9BR61 282 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 MTMR12Q9C0I1 747 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 EBF3Q9H4W6 596 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 PCIF1Q9H4Z3 704 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 PDE11AQ9HCR9 933 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 SIX4Q9UIU6 781 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 PCDHB13Q9Y5F0 798 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 TCHHQ07283 1943 aa17.31■□□□□ 0.36
COL7A1-204ENST00000462475 EXTL3O43909 919 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 PRPF6O94906 941 aaKnown RBP17.3■□□□□ 0.36
COL7A1-204ENST00000462475 LDHAP00338 332 aaKnown RBP17.3■□□□□ 0.36
COL7A1-204ENST00000462475 KRT19P08727 400 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 CSH1P0DML2 217 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 CSH2P0DML3 217 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 ARSAP15289 507 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 CYP2F1P24903 491 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 DDX6P26196 483 aaKnown RBP eCLIP17.3■□□□□ 0.36
COL7A1-204ENST00000462475 RUNX3Q13761 415 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 LMBRD2Q68DH5 695 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-204ENST00000462475 FSTL4Q6MZW2 842 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-204ENST00000462475 ADGRF2Q8IZF7 708 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 TMEM86AQ8N2M4 240 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 SYNPOQ8N3V7 929 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 GLIS3Q8NEA6 775 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 CACTINQ8WUQ7 758 aaKnown RBP17.3■□□□□ 0.36
COL7A1-204ENST00000462475 MRPS31Q92665 395 aaKnown RBP17.3■□□□□ 0.36
COL7A1-204ENST00000462475 KIF9Q9HAQ2 790 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 ABCB6Q9NP58 842 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 TDP1Q9NUW8 608 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 PANK4Q9NVE7 773 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 GDAP2Q9NXN4 497 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 GTF3C4Q9UKN8 822 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 ITGA11Q9UKX5 1188 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 SNX9Q9Y5X1 595 aa17.3■□□□□ 0.36
COL7A1-204ENST00000462475 PTPRJQ12913 1337 aa17.29■□□□□ 0.36
COL7A1-204ENST00000462475 DCDC2BA2VCK2 349 aa17.29■□□□□ 0.36
COL7A1-204ENST00000462475 NOL4O94818 638 aa17.29■□□□□ 0.36
COL7A1-204ENST00000462475 HOXA6P31267 233 aa17.29■□□□□ 0.36
COL7A1-204ENST00000462475 CNR2P34972 360 aa17.29■□□□□ 0.36
COL7A1-204ENST00000462475 MYL7Q01449 175 aa17.29■□□□□ 0.36
COL7A1-204ENST00000462475 ALCAMQ13740 583 aa17.29■□□□□ 0.36
COL7A1-204ENST00000462475 TMEM196Q5HYL7 178 aa17.29■□□□□ 0.36
COL7A1-204ENST00000462475 MON1AQ86VX9 555 aa17.29■□□□□ 0.36
COL7A1-204ENST00000462475 WDR5BQ86VZ2 330 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms