RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 GRASPQ7Z6J2 395 aaPredicted RBP24.39■■□□□ 1.49
CCDC28B-203ENST00000461819 SPATA2LQ8IUW3 424 aaPredicted RBP24.39■■□□□ 1.49
CCDC28B-203ENST00000461819 ADHFE1Q8IWW8 467 aa24.39■■□□□ 1.49
CCDC28B-203ENST00000461819 UHRF1Q96T88 793 aaPredicted RBP24.39■■□□□ 1.49
CCDC28B-203ENST00000461819 PKMYT1Q99640 499 aa24.39■■□□□ 1.49
CCDC28B-203ENST00000461819 BCO2Q9BYV7 579 aa24.39■■□□□ 1.49
CCDC28B-203ENST00000461819 CYP3A43Q9HB55 503 aa24.39■■□□□ 1.49
CCDC28B-203ENST00000461819 HSFX1Q9UBD0 423 aa24.39■■□□□ 1.49
CCDC28B-203ENST00000461819 CLUHO75153 1309 aa24.38■■□□□ 1.49
CCDC28B-203ENST00000461819 MYBPHLA2RUH7 354 aa24.38■■□□□ 1.49
CCDC28B-203ENST00000461819 PMM2O15305 246 aa24.38■■□□□ 1.49
CCDC28B-203ENST00000461819 SOAT2O75908 522 aa24.38■■□□□ 1.49
CCDC28B-203ENST00000461819 SP100P23497 879 aaPredicted RBP24.38■■□□□ 1.49
CCDC28B-203ENST00000461819 TUFMP49411 452 aaKnown RBP24.38■■□□□ 1.49
CCDC28B-203ENST00000461819 CCDC142Q17RM4 750 aa24.38■■□□□ 1.49
CCDC28B-203ENST00000461819 MDH1BQ5I0G3 518 aa24.38■■□□□ 1.49
CCDC28B-203ENST00000461819 C4orf50Q6ZRC1 276 aa24.38■■□□□ 1.49
CCDC28B-203ENST00000461819 RPGRIP1Q96KN7 1286 aa24.38■■□□□ 1.49
CCDC28B-203ENST00000461819 NECAB3Q96P71 396 aaPredicted RBP24.38■■□□□ 1.49
CCDC28B-203ENST00000461819 NAT10Q9H0A0 1025 aaKnown RBP24.38■■□□□ 1.49
CCDC28B-203ENST00000461819 DPEP3Q9H4B8 488 aa24.38■■□□□ 1.49
CCDC28B-203ENST00000461819 WDR6Q9NNW5 1121 aaKnown RBP24.38■■□□□ 1.49
CCDC28B-203ENST00000461819 CRTAC1Q9NQ79 661 aa24.38■■□□□ 1.49
CCDC28B-203ENST00000461819 NME7Q9Y5B8 376 aa24.38■■□□□ 1.49
CCDC28B-203ENST00000461819 PTPN1P18031 435 aaKnown RBP24.37■■□□□ 1.49
CCDC28B-203ENST00000461819 CD58P19256 250 aa24.37■■□□□ 1.49
CCDC28B-203ENST00000461819 TRIM21P19474 475 aaKnown RBP24.37■■□□□ 1.49
CCDC28B-203ENST00000461819 EPHB3P54753 998 aa24.37■■□□□ 1.49
CCDC28B-203ENST00000461819 CYP27A1Q02318 531 aa24.37■■□□□ 1.49
CCDC28B-203ENST00000461819 ZP2Q05996 745 aa24.37■■□□□ 1.49
CCDC28B-203ENST00000461819 FAM171BQ6P995 826 aa24.37■■□□□ 1.49
CCDC28B-203ENST00000461819 B3GALNT2Q8NCR0 500 aa24.37■■□□□ 1.49
CCDC28B-203ENST00000461819 MYLPFQ96A32 169 aa24.37■■□□□ 1.49
CCDC28B-203ENST00000461819 TNIP3Q96KP6 325 aa24.37■■□□□ 1.49
CCDC28B-203ENST00000461819 ABCB6Q9NP58 842 aa24.37■■□□□ 1.49
CCDC28B-203ENST00000461819 SAMSN1Q9NSI8 373 aaKnown RBP24.37■■□□□ 1.49
CCDC28B-203ENST00000461819 HCFC1R1Q9NWW0 138 aa24.37■■□□□ 1.49
CCDC28B-203ENST00000461819 NR2E1Q9Y466 385 aa24.37■■□□□ 1.49
CCDC28B-203ENST00000461819 MYH10P35580 1976 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 VCANP13611 3396 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 SYCE3A1L190 88 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 KCNJ18B7U540 433 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 SSTR3P32745 418 aaPredicted RBP24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 NDST1P52848 882 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 MYL5Q02045 173 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 LRMPQ12912 555 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 KCNJ12Q14500 433 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 MAN2A1Q16706 1144 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 ANO6Q4KMQ2 910 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 IQCEQ6IPM2 695 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 MYCBPAPQ8TBZ2 947 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 FAM200AQ8TCP9 573 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 TATDN2Q93075 761 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 FAXDC2Q96IV6 333 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 ZNF512Q96ME7 567 aaPredicted RBP24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 NT5C1BQ96P26 610 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 CORO1BQ9BR76 489 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 DNAI2Q9GZS0 605 aa24.36■■□□□ 1.49
CCDC28B-203ENST00000461819 NOTCH4Q99466 2003 aa24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 A0A0C4DFX4 3053 aa24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 HAPLN1P10915 354 aaPredicted RBP24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 PRKCSHP14314 528 aaPredicted RBP24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 PTPN2P17706 415 aa24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 NTHL1P78549 312 aa24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 INCA1Q0VD86 236 aa24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 ORC1Q13415 861 aa24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 VEPH1Q14D04 833 aa24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 CFAP221Q4G0U5 840 aa24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 PABPC1LQ4VXU2 614 aaKnown RBP24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 UNC93AQ86WB7 457 aa24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 FUBP3Q96I24 572 aaKnown RBP eCLIP24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 ARID3AQ99856 593 aa24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 GCNT4Q9P109 453 aa24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 CEP72Q9P209 647 aa24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 DNMT3BQ9UBC3 853 aaKnown RBP24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 HMGXB4Q9UGU5 601 aa24.35■■□□□ 1.49
CCDC28B-203ENST00000461819 FSHRP23945 695 aa24.34■■□□□ 1.49
CCDC28B-203ENST00000461819 CYP2F1P24903 491 aa24.34■■□□□ 1.49
CCDC28B-203ENST00000461819 EEF1GP26641 437 aaKnown RBP24.34■■□□□ 1.49
CCDC28B-203ENST00000461819 TCP11X2Q5H9J9 407 aa24.34■■□□□ 1.49
CCDC28B-203ENST00000461819 GET4Q7L5D6 327 aaPredicted RBP24.34■■□□□ 1.49
CCDC28B-203ENST00000461819 ACOT1Q86TX2 421 aa24.34■■□□□ 1.49
CCDC28B-203ENST00000461819 TTC39CQ8N584 583 aa24.34■■□□□ 1.49
CCDC28B-203ENST00000461819 TDRD5Q8NAT2 981 aaKnown RBP24.34■■□□□ 1.49
CCDC28B-203ENST00000461819 PCED1BQ96HM7 432 aa24.34■■□□□ 1.49
CCDC28B-203ENST00000461819 LPIN3Q9BQK8 851 aa24.34■■□□□ 1.49
CCDC28B-203ENST00000461819 TUBGCP2Q9BSJ2 902 aa24.34■■□□□ 1.49
CCDC28B-203ENST00000461819 PES1O00541 588 aaKnown RBP24.33■■□□□ 1.49
CCDC28B-203ENST00000461819 RHOP08100 348 aa24.33■■□□□ 1.49
CCDC28B-203ENST00000461819 ATF6P18850 670 aa24.33■■□□□ 1.49
CCDC28B-203ENST00000461819 TBXAS1P24557 533 aaPredicted RBP24.33■■□□□ 1.49
CCDC28B-203ENST00000461819 CUL2Q13617 745 aa24.33■■□□□ 1.49
CCDC28B-203ENST00000461819 OTOP3Q7RTS5 596 aa24.33■■□□□ 1.49
CCDC28B-203ENST00000461819 ITIH5Q86UX2 942 aa24.33■■□□□ 1.49
CCDC28B-203ENST00000461819 AOPEPQ8N6M6 819 aa24.33■■□□□ 1.49
CCDC28B-203ENST00000461819 EHBP1Q8NDI1 1231 aa24.33■■□□□ 1.49
CCDC28B-203ENST00000461819 ACSF2Q96CM8 615 aaPredicted RBP24.33■■□□□ 1.49
CCDC28B-203ENST00000461819 NT5C1AQ9BXI3 368 aa24.33■■□□□ 1.49
CCDC28B-203ENST00000461819 INTS2Q9H0H0 1204 aaKnown RBP24.33■■□□□ 1.49
CCDC28B-203ENST00000461819 ASAH2Q9NR71 780 aa24.33■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms