RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 CXorf38Q8TB03 319 aa14.98□□□□□ -0.01
USP4-206ENST00000461553 CSGALNACT1Q8TDX6 532 aa14.98□□□□□ -0.01
USP4-206ENST00000461553 GIPC2Q8TF65 315 aa14.98□□□□□ -0.01
USP4-206ENST00000461553 SCFD1Q8WVM8 642 aa14.98□□□□□ -0.01
USP4-206ENST00000461553 NELL2Q99435 816 aa14.98□□□□□ -0.01
USP4-206ENST00000461553 CGRRF1Q99675 332 aa14.98□□□□□ -0.01
USP4-206ENST00000461553 TRPV5Q9NQA5 729 aa14.98□□□□□ -0.01
USP4-206ENST00000461553 CGNQ9P2M7 1197 aaKnown RBP14.98□□□□□ -0.01
USP4-206ENST00000461553 ZMYM5Q9UJ78 669 aa14.98□□□□□ -0.01
USP4-206ENST00000461553 PIAS3Q9Y6X2 628 aa14.98□□□□□ -0.01
USP4-206ENST00000461553 CLIC2O15247 247 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 TGFB1I1O43294 461 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 LAMTOR5O43504 91 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 PRPF40AO75400 957 aaKnown RBP14.97□□□□□ -0.01
USP4-206ENST00000461553 TNNI1P19237 187 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 KRT85P78386 507 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 BMT2Q1RMZ1 405 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 ARID3BQ8IVW6 561 aaPredicted RBP14.97□□□□□ -0.01
USP4-206ENST00000461553 XXYLT1Q8NBI6 393 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 MSANTD3Q96H12 275 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 HPDLQ96IR7 371 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 SPATA32Q96LK8 384 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 PI4K2AQ9BTU6 479 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 ABCB6Q9NP58 842 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 SLC39A2Q9NP94 309 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 EXOC1Q9NV70 894 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 TMLHEQ9NVH6 421 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 RCOR1Q9UKL0 485 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 NDRG2Q9UN36 371 aaKnown RBP14.97□□□□□ -0.01
USP4-206ENST00000461553 MTF2Q9Y483 593 aaPredicted RBP14.97□□□□□ -0.01
USP4-206ENST00000461553 EP300Q09472 2414 aaPredicted RBP14.97□□□□□ -0.01
USP4-206ENST00000461553 SPTBN4Q9H254 2564 aa14.97□□□□□ -0.01
USP4-206ENST00000461553 CHADO15335 359 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 SLFN14P0C7P3 912 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 SP9P0CG40 484 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 CSH1P0DML2 217 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 CSH2P0DML3 217 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 PFKFB1P16118 471 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 RPL10AP62906 217 aaKnown RBP14.96□□□□□ -0.01
USP4-206ENST00000461553 CYP24A1Q07973 514 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 FCHO2Q0JRZ9 810 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 PSMD6Q15008 389 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 OTOGLQ3ZCN5 2332 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 C1orf228Q6PIY5 440 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 DPH6Q7L8W6 267 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 OSTM1Q86WC4 334 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 SPATA2LQ8IUW3 424 aaPredicted RBP14.96□□□□□ -0.01
USP4-206ENST00000461553 C12orf56Q8IXR9 622 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 GRAMD1CQ8IYS0 662 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 RDH13Q8NBN7 331 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 GOLGA5Q8TBA6 731 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 RSPRY1Q96DX4 576 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 MKNK1Q9BUB5 465 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 SEMA4AQ9H3S1 761 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 TASP1Q9H6P5 420 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 IL21Q9HBE4 155 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 OBP2AQ9NY56 170 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 UXTQ9UBK9 157 aaPredicted RBP14.96□□□□□ -0.01
USP4-206ENST00000461553 SERTAD1Q9UHV2 236 aa14.96□□□□□ -0.01
USP4-206ENST00000461553 WDR87Q6ZQQ6 2873 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 MYO16Q9Y6X6 1858 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 ARNTLO00327 626 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 ACTN4O43707 911 aaKnown RBP14.95□□□□□ -0.02
USP4-206ENST00000461553 EXOC3O60645 756 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 CLSTN1O94985 981 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 PRAMEF12O95522 483 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 DDX6P26196 483 aaKnown RBP eCLIP14.95□□□□□ -0.02
USP4-206ENST00000461553 RPS9P46781 194 aaKnown RBP14.95□□□□□ -0.02
USP4-206ENST00000461553 GPR15P49685 360 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 KNOP1Q1ED39 458 aaKnown RBP14.95□□□□□ -0.02
USP4-206ENST00000461553 SOWAHAQ2M3V2 549 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 ARHGAP29Q52LW3 1261 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 C4orf50Q6ZRC1 276 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 TRAPPC11Q7Z392 1133 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 FAM3CQ92520 227 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 CLDN23Q96B33 292 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 CCDC127Q96BQ5 260 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 FUBP3Q96I24 572 aaKnown RBP eCLIP14.95□□□□□ -0.02
USP4-206ENST00000461553 MMS19Q96T76 1030 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 SYT15Q9BQS2 421 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 USP25Q9UHP3 1055 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 FBXO4Q9UKT5 387 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 MAGED2Q9UNF1 606 aaPredicted RBP14.95□□□□□ -0.02
USP4-206ENST00000461553 ATP6V1DQ9Y5K8 247 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 R4GN57 208 aa14.95□□□□□ -0.02
USP4-206ENST00000461553 A0A1B0GVL5 298 aa14.94□□□□□ -0.02
USP4-206ENST00000461553 GABRDO14764 452 aa14.94□□□□□ -0.02
USP4-206ENST00000461553 HCRTO43612 131 aa14.94□□□□□ -0.02
USP4-206ENST00000461553 MYL1P05976 194 aa14.94□□□□□ -0.02
USP4-206ENST00000461553 CMA1P23946 247 aa14.94□□□□□ -0.02
USP4-206ENST00000461553 CYP2F1P24903 491 aa14.94□□□□□ -0.02
USP4-206ENST00000461553 WEE1P30291 646 aa14.94□□□□□ -0.02
USP4-206ENST00000461553 AVPR1AP37288 418 aa14.94□□□□□ -0.02
USP4-206ENST00000461553 KPNA1P52294 538 aaPredicted RBP14.94□□□□□ -0.02
USP4-206ENST00000461553 NLRP12P59046 1061 aa14.94□□□□□ -0.02
USP4-206ENST00000461553 PSMC1P62191 440 aaKnown RBP14.94□□□□□ -0.02
USP4-206ENST00000461553 TNNC1P63316 161 aa14.94□□□□□ -0.02
USP4-206ENST00000461553 PLCB2Q00722 1185 aa14.94□□□□□ -0.02
USP4-206ENST00000461553 MAPRE1Q15691 268 aaKnown RBP14.94□□□□□ -0.02
USP4-206ENST00000461553 CFAP221Q4G0U5 840 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms