RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 PRR5-ARHGAP8B1AHC4 643 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 TBX3O15119 743 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 TOP3BO95985 862 aaKnown RBP12.29□□□□□ -0.44
CPSF3-202ENST00000460593 RFX1P22670 979 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 PEX2P28328 305 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 NT5C2P49902 561 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 ARHGAP8P85298 464 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 NFX1Q12986 1120 aaKnown RBP12.29□□□□□ -0.44
CPSF3-202ENST00000460593 MSLNQ13421 630 aaPredicted RBP12.29□□□□□ -0.44
CPSF3-202ENST00000460593 RALGPS1Q5JS13 557 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 TPTE2Q6XPS3 522 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 BBOF1Q8ND07 529 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 AGBL1Q96MI9 1066 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 NR1H4Q96RI1 486 aaPredicted RBP12.29□□□□□ -0.44
CPSF3-202ENST00000460593 RANBP17Q9H2T7 1088 aaKnown RBP12.29□□□□□ -0.44
CPSF3-202ENST00000460593 MMADHCQ9H3L0 296 aaPredicted RBP12.29□□□□□ -0.44
CPSF3-202ENST00000460593 DDX43Q9NXZ2 648 aaKnown RBP12.29□□□□□ -0.44
CPSF3-202ENST00000460593 C10orf71Q711Q0 1435 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 STRCP1A6NGW2 1772 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.29□□□□□ -0.44
CPSF3-202ENST00000460593 ALOX15BO15296 676 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 BUD23O43709 281 aaKnown RBP12.29□□□□□ -0.44
CPSF3-202ENST00000460593 PROSCO94903 275 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 KRT1P04264 644 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 SOX10P56693 466 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 BTKQ06187 659 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 FAAP100Q0VG06 881 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 NFIL3Q16649 462 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 RNASEH2BQ5TBB1 312 aaKnown RBP12.29□□□□□ -0.44
CPSF3-202ENST00000460593 ZCCHC23Q6ZST2 131 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 CEP128Q6ZU80 1094 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 STXBP4Q6ZWJ1 553 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 CENPUQ71F23 418 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 RELL1Q8IUW5 271 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 IGDCC3Q8IVU1 814 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 EBF4Q9BQW3 602 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 ADAMTS6Q9UKP5 1117 aa12.29□□□□□ -0.44
CPSF3-202ENST00000460593 ZSCAN9O15535 394 aaPredicted RBP12.28□□□□□ -0.44
CPSF3-202ENST00000460593 PSMD10O75832 226 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 CIB2O75838 187 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 TPP2P29144 1249 aaPredicted RBP12.28□□□□□ -0.44
CPSF3-202ENST00000460593 SLC1A1P43005 524 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 PEX3P56589 373 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 PRKD1Q15139 912 aaPredicted RBP12.28□□□□□ -0.44
CPSF3-202ENST00000460593 HIF1AQ16665 826 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 GSTA3Q16772 222 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 EFHC2Q5JST6 749 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 MYLK4Q86YV6 388 aaPredicted RBP12.28□□□□□ -0.44
CPSF3-202ENST00000460593 RHOT1Q8IXI2 618 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 ST13P4Q8IZP2 240 aaPredicted RBP12.28□□□□□ -0.44
CPSF3-202ENST00000460593 SLC26A7Q8TE54 656 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 MZB1Q8WU39 189 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 CYP4F11Q9HBI6 524 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 SERPINA10Q9UK55 444 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 MTO1Q9Y2Z2 717 aaKnown RBP12.28□□□□□ -0.44
CPSF3-202ENST00000460593 MYPNQ86TC9 1320 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 MT-ND3P03897 115 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 UNGP13051 313 aaPredicted RBP12.28□□□□□ -0.44
CPSF3-202ENST00000460593 MAGEA10P43363 369 aaPredicted RBP12.28□□□□□ -0.44
CPSF3-202ENST00000460593 NSFP46459 744 aaKnown RBP12.28□□□□□ -0.44
CPSF3-202ENST00000460593 SNRNP35Q16560 246 aaKnown RBP12.28□□□□□ -0.44
CPSF3-202ENST00000460593 CCDC174Q6PII3 467 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 OR6Y1Q8NGX8 325 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 DCAKDQ8WVC6 231 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 NCSTNQ92542 709 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 NT5C1BQ96P26 610 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 SENP1Q9P0U3 644 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 IVNS1ABPQ9Y6Y0 642 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 LAMB2P55268 1798 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 ATP6V1G1O75348 118 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 FAM163BP0C2L3 166 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 PRELPP51888 382 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 AP2B1P63010 937 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 SCARA3Q6AZY7 606 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 FBXL19Q6PCT2 694 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 MOXD1Q6UVY6 613 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 RILPQ96NA2 401 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 HAPLN3Q96S86 360 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 MMP19Q99542 508 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 SLC13A1Q9BZW2 595 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 C20orf27Q9GZN8 174 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 PLA2G4CQ9UP65 541 aa12.28□□□□□ -0.44
CPSF3-202ENST00000460593 GNPATO15228 680 aa12.27□□□□□ -0.44
CPSF3-202ENST00000460593 TLR3O15455 904 aaKnown RBP12.27□□□□□ -0.44
CPSF3-202ENST00000460593 HNRNPCL1O60812 293 aaKnown RBP12.27□□□□□ -0.44
CPSF3-202ENST00000460593 C6orf222P0C671 652 aaPredicted RBP12.27□□□□□ -0.44
CPSF3-202ENST00000460593 ATP6V1B1P15313 513 aa12.27□□□□□ -0.44
CPSF3-202ENST00000460593 CRABP2P29373 138 aa12.27□□□□□ -0.44
CPSF3-202ENST00000460593 AQP5P55064 265 aa12.27□□□□□ -0.44
CPSF3-202ENST00000460593 ACTR3P61158 418 aa12.27□□□□□ -0.44
CPSF3-202ENST00000460593 SMAD1Q15797 465 aaKnown RBP12.27□□□□□ -0.44
CPSF3-202ENST00000460593 SMTNL2Q2TAL5 461 aa12.27□□□□□ -0.44
CPSF3-202ENST00000460593 SIAH1Q8IUQ4 282 aa12.27□□□□□ -0.44
CPSF3-202ENST00000460593 SLC9A9Q8IVB4 645 aa12.27□□□□□ -0.44
CPSF3-202ENST00000460593 PALM2Q8IXS6 379 aa12.27□□□□□ -0.44
CPSF3-202ENST00000460593 ALLCQ8N6M5 410 aa12.27□□□□□ -0.44
CPSF3-202ENST00000460593 NACC1Q96RE7 527 aa12.27□□□□□ -0.44
CPSF3-202ENST00000460593 HEMK1Q9Y5R4 338 aaPredicted RBP12.27□□□□□ -0.44
CPSF3-202ENST00000460593 PLIN4Q96Q06 1357 aa12.27□□□□□ -0.45
CPSF3-202ENST00000460593 F8VP50 259 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms