RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 DEPDC1BQ8WUY9 529 aa22.75■■□□□ 1.23
HMGB3-205ENST00000455596 ZNF516Q92618 1163 aa22.75■■□□□ 1.23
HMGB3-205ENST00000455596 ATOH1Q92858 354 aaPredicted RBP22.75■■□□□ 1.23
HMGB3-205ENST00000455596 E2F7Q96AV8 911 aa22.75■■□□□ 1.23
HMGB3-205ENST00000455596 CCDC34Q96HJ3 373 aa22.75■■□□□ 1.23
HMGB3-205ENST00000455596 GCNAQ96QF7 691 aa22.75■■□□□ 1.23
HMGB3-205ENST00000455596 MMS19Q96T76 1030 aa22.75■■□□□ 1.23
HMGB3-205ENST00000455596 PKMYT1Q99640 499 aa22.75■■□□□ 1.23
HMGB3-205ENST00000455596 TRMT61BQ9BVS5 477 aaKnown RBP22.75■■□□□ 1.23
HMGB3-205ENST00000455596 BRD9Q9H8M2 597 aa22.75■■□□□ 1.23
HMGB3-205ENST00000455596 ABCB6Q9NP58 842 aa22.75■■□□□ 1.23
HMGB3-205ENST00000455596 GTF3C4Q9UKN8 822 aa22.75■■□□□ 1.23
HMGB3-205ENST00000455596 PATJQ8NI35 1801 aa22.74■■□□□ 1.23
HMGB3-205ENST00000455596 HCRTO43612 131 aa22.74■■□□□ 1.23
HMGB3-205ENST00000455596 CDC25CP30307 473 aa22.74■■□□□ 1.23
HMGB3-205ENST00000455596 VIPR2P41587 438 aa22.74■■□□□ 1.23
HMGB3-205ENST00000455596 TRPC3Q13507 836 aa22.74■■□□□ 1.23
HMGB3-205ENST00000455596 STXBP5Q5T5C0 1151 aa22.74■■□□□ 1.23
HMGB3-205ENST00000455596 GPR158Q5T848 1215 aa22.74■■□□□ 1.23
HMGB3-205ENST00000455596 ALYREFQ86V81 257 aaKnown RBP22.74■■□□□ 1.23
HMGB3-205ENST00000455596 SPATA2LQ8IUW3 424 aaPredicted RBP22.74■■□□□ 1.23
HMGB3-205ENST00000455596 DTWD2Q8NBA8 298 aa22.74■■□□□ 1.23
HMGB3-205ENST00000455596 PJA1Q8NG27 643 aa22.74■■□□□ 1.23
HMGB3-205ENST00000455596 KBTBD7Q8WVZ9 684 aa22.74■■□□□ 1.23
HMGB3-205ENST00000455596 DNASE1L2Q92874 299 aa22.74■■□□□ 1.23
HMGB3-205ENST00000455596 GZF1Q9H116 711 aaPredicted RBP22.74■■□□□ 1.23
HMGB3-205ENST00000455596 CDH9Q9ULB4 789 aa22.74■■□□□ 1.23
HMGB3-205ENST00000455596 KIF26AQ9ULI4 1882 aaPredicted RBP22.73■■□□□ 1.23
HMGB3-205ENST00000455596 ANAPC1Q9H1A4 1944 aa22.73■■□□□ 1.23
HMGB3-205ENST00000455596 KANSL1LA0AUZ9 987 aa22.73■■□□□ 1.23
HMGB3-205ENST00000455596 CALUO43852 315 aaPredicted RBP22.73■■□□□ 1.23
HMGB3-205ENST00000455596 PHACTR2O75167 634 aa22.73■■□□□ 1.23
HMGB3-205ENST00000455596 NR3C1P04150 777 aa22.73■■□□□ 1.23
HMGB3-205ENST00000455596 WARSP23381 471 aaKnown RBP22.73■■□□□ 1.23
HMGB3-205ENST00000455596 CASP4P49662 377 aa22.73■■□□□ 1.23
HMGB3-205ENST00000455596 AP3M2P53677 418 aa22.73■■□□□ 1.23
HMGB3-205ENST00000455596 RPL10AP62906 217 aaKnown RBP22.73■■□□□ 1.23
HMGB3-205ENST00000455596 TNNC1P63316 161 aa22.73■■□□□ 1.23
HMGB3-205ENST00000455596 PLEKHO2Q8TD55 490 aa22.73■■□□□ 1.23
HMGB3-205ENST00000455596 PARD3BQ8TEW8 1205 aa22.73■■□□□ 1.23
HMGB3-205ENST00000455596 IRF7Q92985 503 aa22.73■■□□□ 1.23
HMGB3-205ENST00000455596 PHOX2BQ99453 314 aa22.73■■□□□ 1.23
HMGB3-205ENST00000455596 SYT15Q9BQS2 421 aa22.73■■□□□ 1.23
HMGB3-205ENST00000455596 DDX23Q9BUQ8 820 aaKnown RBP22.73■■□□□ 1.23
HMGB3-205ENST00000455596 FOXQ1Q9C009 403 aa22.73■■□□□ 1.23
HMGB3-205ENST00000455596 IL21Q9HBE4 155 aa22.73■■□□□ 1.23
HMGB3-205ENST00000455596 FAM86C1Q9NVL1 165 aa22.73■■□□□ 1.23
HMGB3-205ENST00000455596 WDFY4Q6ZS81 3184 aa22.73■■□□□ 1.23
HMGB3-205ENST00000455596 GOLGA6L4A6NEF3 574 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 HEPACAM2A8MVW5 462 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 STAU1O95793 577 aaKnown RBP22.72■■□□□ 1.23
HMGB3-205ENST00000455596 DCNP07585 359 aaKnown RBP22.72■■□□□ 1.23
HMGB3-205ENST00000455596 CSH1P0DML2 217 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 CSH2P0DML3 217 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 CYP2F1P24903 491 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 GDI1P31150 447 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 ATICP31939 592 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 GPR15P49685 360 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 MRE11P49959 708 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 BIRC3Q13489 604 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 KCNB1Q14721 858 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 WDR72Q3MJ13 1102 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 CFAP221Q4G0U5 840 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 FAM171BQ6P995 826 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 C4orf50Q6ZRC1 276 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 TPRG1Q6ZUI0 275 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 ARID3BQ8IVW6 561 aaPredicted RBP22.72■■□□□ 1.23
HMGB3-205ENST00000455596 MFSD6LQ8IWD5 586 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 SYAP1Q96A49 352 aaPredicted RBP22.72■■□□□ 1.23
HMGB3-205ENST00000455596 FUBP3Q96I24 572 aaKnown RBP eCLIP22.72■■□□□ 1.23
HMGB3-205ENST00000455596 MKNK1Q9BUB5 465 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 TASP1Q9H6P5 420 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 HEBP1Q9NRV9 189 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 TRAF3IP3Q9Y228 551 aa22.72■■□□□ 1.23
HMGB3-205ENST00000455596 MYBPHLA2RUH7 354 aa22.71■■□□□ 1.23
HMGB3-205ENST00000455596 LRRIQ3A6PVS8 624 aaPredicted RBP22.71■■□□□ 1.23
HMGB3-205ENST00000455596 FAM163BP0C2L3 166 aa22.71■■□□□ 1.23
HMGB3-205ENST00000455596 LMO2P25791 158 aa22.71■■□□□ 1.23
HMGB3-205ENST00000455596 MYL6P60660 151 aa22.71■■□□□ 1.23
HMGB3-205ENST00000455596 CLDN10P78369 228 aa22.71■■□□□ 1.23
HMGB3-205ENST00000455596 CYP4F8P98187 520 aa22.71■■□□□ 1.23
HMGB3-205ENST00000455596 MAPRE1Q15691 268 aaKnown RBP22.71■■□□□ 1.23
HMGB3-205ENST00000455596 CEP135Q66GS9 1140 aa22.71■■□□□ 1.23
HMGB3-205ENST00000455596 SNX25Q9H3E2 840 aa22.71■■□□□ 1.23
HMGB3-205ENST00000455596 TRPV5Q9NQA5 729 aa22.71■■□□□ 1.23
HMGB3-205ENST00000455596 FRMD4BQ9Y2L6 1034 aa22.71■■□□□ 1.23
HMGB3-205ENST00000455596 NCANO14594 1321 aa22.71■■□□□ 1.23
HMGB3-205ENST00000455596 DPYSL4O14531 572 aa22.7■■□□□ 1.22
HMGB3-205ENST00000455596 ZNF263O14978 683 aa22.7■■□□□ 1.22
HMGB3-205ENST00000455596 ATP2C2O75185 946 aa22.7■■□□□ 1.22
HMGB3-205ENST00000455596 TACC1O75410 805 aa22.7■■□□□ 1.22
HMGB3-205ENST00000455596 PDGFRBP09619 1106 aa22.7■■□□□ 1.22
HMGB3-205ENST00000455596 HMGA1P17096 107 aaKnown RBP22.7■■□□□ 1.22
HMGB3-205ENST00000455596 PSMC1P62191 440 aaKnown RBP22.7■■□□□ 1.22
HMGB3-205ENST00000455596 UBXN2BQ14CS0 331 aa22.7■■□□□ 1.22
HMGB3-205ENST00000455596 DDR2Q16832 855 aa22.7■■□□□ 1.22
HMGB3-205ENST00000455596 CCDC142Q17RM4 750 aa22.7■■□□□ 1.22
HMGB3-205ENST00000455596 SDHAF4Q5VUM1 108 aa22.7■■□□□ 1.22
HMGB3-205ENST00000455596 TDRD10Q5VZ19 366 aaKnown RBP22.7■■□□□ 1.22
HMGB3-205ENST00000455596 YAF2Q8IY57 180 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms