RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ZNF461Q8TAF7 563 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 TMEM174Q8WUU8 243 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 NELL1Q92832 810 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 TUBGCP2Q9BSJ2 902 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 BCO2Q9BYV7 579 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 CDT1Q9H211 546 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 AVENQ9NQS1 362 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-208ENST00000437607 IFNKQ9P0W0 207 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 LIMA1Q9UHB6 759 aaKnown RBP13.07□□□□□ -0.32
PTPRF-208ENST00000437607 FBXO4Q9UKT5 387 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 MRPS23Q9Y3D9 190 aaKnown RBP13.07□□□□□ -0.32
PTPRF-208ENST00000437607 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.07□□□□□ -0.32
PTPRF-208ENST00000437607 STYXL1Q9Y6J8 313 aa13.07□□□□□ -0.32
PTPRF-208ENST00000437607 A0A0B4J269 797 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 LGALS16A8MUM7 142 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 MAPK13O15264 365 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 OGTO15294 1046 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 LAMTOR5O43504 91 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 MCF2P10911 925 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 PROZP22891 400 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 GRM5P41594 1212 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 CASP4P49662 377 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 OSTNP61366 133 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 PFKPQ01813 784 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 CSTF1Q05048 431 aaKnown RBP13.06□□□□□ -0.32
PTPRF-208ENST00000437607 MRPL58Q14197 206 aaKnown RBP13.06□□□□□ -0.32
PTPRF-208ENST00000437607 KYAT1Q16773 422 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 VARS2Q5ST30 1063 aaKnown RBP13.06□□□□□ -0.32
PTPRF-208ENST00000437607 FKBP15Q5T1M5 1219 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 IRF2BP1Q8IU81 584 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 ZNF687Q8N1G0 1237 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 TCEAL4Q96EI5 215 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 ZBTB45Q96K62 511 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-208ENST00000437607 HINFPQ9BQA5 517 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 FAM213AQ9BRX8 229 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 HEBP1Q9NRV9 189 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 DLL3Q9NYJ7 618 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 GDE1Q9NZC3 331 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 MYO16Q9Y6X6 1858 aa13.06□□□□□ -0.32
PTPRF-208ENST00000437607 GREB1Q4ZG55 1949 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 LAMA1P25391 3075 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 ZNF233A6NK53 670 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 TULP1O00294 542 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-208ENST00000437607 PODXLO00592 558 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 TRAPPC3O43617 180 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 LILRB5O75023 590 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 ADCY5O95622 1261 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 ADRB2P07550 413 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 PTPN2P17706 415 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 CCR2P41597 374 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 ZNF75DP51815 510 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 BFSP1Q12934 665 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 ZBTB41Q5SVQ8 909 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 TSSK4Q6SA08 328 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 DGLUCYQ7Z3D6 616 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 CBWD2Q8IUF1 395 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 BRSK2Q8IWQ3 736 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 TRIM59Q8IWR1 403 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 TMEM130Q8N3G9 435 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 RDH13Q8NBN7 331 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 ZBTB44Q8NCP5 570 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 ELSPBP1Q96BH3 223 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 XPO4Q9C0E2 1151 aaKnown RBP13.05□□□□□ -0.32
PTPRF-208ENST00000437607 VPS16Q9H269 839 aa13.05□□□□□ -0.32
PTPRF-208ENST00000437607 RBAKQ9NYW8 714 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-208ENST00000437607 TPRP12270 2363 aaKnown RBP13.05□□□□□ -0.32
PTPRF-208ENST00000437607 EPG5Q9HCE0 2579 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 CACNA1BQ00975 2339 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 A0A1B0GTH6 734 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 GOLGA6L6A8MZA4 724 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 SPTLC1O15269 473 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 STX10O60499 249 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 MOSPD3O75425 235 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 ATF2P15336 505 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 KCNE1P15382 129 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 MAGEA9P43362 315 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 RPS9P46781 194 aaKnown RBP13.04□□□□□ -0.32
PTPRF-208ENST00000437607 VAMP7P51809 220 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 CYP24A1Q07973 514 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 GRM2Q14416 872 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 PUM1Q14671 1186 aaKnown RBP eCLIP13.04□□□□□ -0.32
PTPRF-208ENST00000437607 FAM78AQ5JUQ0 283 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 TCEAL8Q8IYN2 117 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 C18orf25Q96B23 403 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-208ENST00000437607 MRFAP1L1Q96HT8 127 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 ZSWIM3Q96MP5 696 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 FNBP1Q96RU3 617 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 CORO1BQ9BR76 489 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 CCDC94Q9BW85 323 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-208ENST00000437607 PRMT8Q9NR22 394 aaPredicted RBP13.04□□□□□ -0.32
PTPRF-208ENST00000437607 FBXL5Q9UKA1 691 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 PCDHGA2Q9Y5H1 932 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 NCANO14594 1321 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 KIAA1549LQ6ZVL6 1849 aa13.04□□□□□ -0.32
PTPRF-208ENST00000437607 SYN3O14994 580 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 LRG1P02750 347 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 AFPP02771 609 aaKnown RBP13.03□□□□□ -0.32
PTPRF-208ENST00000437607 TRIM49P0CI25 452 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 TRIM49CP0CI26 452 aa13.03□□□□□ -0.32
PTPRF-208ENST00000437607 TDGF1P13385 188 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms