RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 SEPT1Q8WYJ6 367 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 CKMP06732 381 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 PNPLA4P41247 253 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 USP10Q14694 798 aaKnown RBP12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 CACNA2D2Q9NY47 1150 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 MAP10Q9P2G4 905 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 C2orf81A6NN90 581 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 ZNF185O15231 689 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 ANKS6Q68DC2 871 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 ANO5Q75V66 913 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 C1orf131Q8NDD1 294 aaKnown RBP12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 CATSPER1Q8NEC5 780 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 RUBCNQ92622 972 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 WNK4Q96J92 1243 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 WWOXQ9NZC7 414 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 ICAM1P05362 532 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 SLC11A2P49281 568 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 ZNF200P98182 395 aaPredicted RBP12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 PTK6Q13882 451 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 UBA3Q8TBC4 463 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 MED8Q96G25 268 aa12.56□□□□□ -0.4
CCDC88A-207ENST00000436346 F5H5T6 163 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 GUCY1A3Q02108 690 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 GMNCA6NCL1 334 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 NR3C2P08235 984 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 MBL2P11226 248 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 CDH2P19022 906 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 GPD1P21695 349 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 RICTORQ6R327 1708 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 SHC4Q6S5L8 630 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 PMPCBO75439 489 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 HIC1Q14526 733 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 PLD3Q8IV08 490 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 FBXL21Q9UKT6 434 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 ANO9A1A5B4 782 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 FOXN1O15353 648 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 ZNF177Q13360 481 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 ADGRF2Q8IZF7 708 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 UCMAQ8WVF2 138 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 NIF3L1Q9GZT8 377 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 SLC39A10Q9ULF5 831 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 HBP1O60381 514 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 AP1G2O75843 785 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 KRT16P08779 473 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 SERAC1Q96JX3 654 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 CDK5RAP1Q96SZ6 601 aaKnown RBP12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 TSC22D3Q99576 134 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 RNF112Q9ULX5 631 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 TARSL2A2RTX5 802 aaKnown RBP12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 FAM187AA6NFU0 413 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 AKAP10O43572 662 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 MZF1P28698 734 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 TRPC1P48995 793 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 RPS6P62753 249 aaKnown RBP12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 METTL16Q86W50 562 aaKnown RBP12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 C7orf25Q9BPX7 421 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 ETNK1Q9HBU6 452 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 NEU2Q9Y3R4 380 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 NCF1BA6NI72 391 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 NCF1CA8MVU1 366 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 FKBP9O95302 570 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 HLA-DRAP01903 254 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 NCF1P14598 390 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 FKBP9P1Q75LS8 142 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 USP13Q92995 863 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 B3GAT3O94766 335 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 ASS1P00966 412 aaKnown RBP12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 CHGBP05060 677 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 URODP06132 367 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 ALDH6A1Q02252 535 aaKnown RBP12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 SFSWAPQ12872 951 aaKnown RBP12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 DENND5BQ6ZUT9 1274 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 NBPF15Q8N660 670 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 HASPINQ8TF76 798 aa12.55□□□□□ -0.4
CCDC88A-207ENST00000436346 GPR182O15218 404 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 TEX33O43247 280 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 VTNP04004 478 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 ERFP50548 548 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 RSAD1Q9HA92 442 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 LIMA1Q9UHB6 759 aaKnown RBP12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 ZNF229Q9UJW7 825 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 CYTH3O43739 400 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 GTF2H1P32780 548 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 ORC1Q13415 861 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 LONRF1Q17RB8 773 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 UGT3A1Q6NUS8 523 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 CLEC4FQ8N1N0 589 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 ERLEC1Q96DZ1 483 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 DSEQ9UL01 958 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 PTPRMP28827 1452 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 VWDEQ8N2E2 1590 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 APOA4P06727 396 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 PWP1Q13610 501 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 PDIA6Q15084 440 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 C16orf89Q6UX73 402 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 MTA3Q9BTC8 594 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 WDCPQ9H6R7 721 aa12.54□□□□□ -0.4
CCDC88A-207ENST00000436346 H2AFY2Q9P0M6 372 aaPredicted RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms