RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 ING5Q8WYH8 240 aa19.94■□□□□ 0.78
SHH-203ENST00000435425 SLC35C1Q96A29 364 aa19.94■□□□□ 0.78
SHH-203ENST00000435425 MED15Q96RN5 788 aa19.94■□□□□ 0.78
SHH-203ENST00000435425 MYADMQ96S97 322 aa19.94■□□□□ 0.78
SHH-203ENST00000435425 DPEP3Q9H4B8 488 aa19.94■□□□□ 0.78
SHH-203ENST00000435425 APOBEC3GQ9HC16 384 aaKnown RBP19.94■□□□□ 0.78
SHH-203ENST00000435425 CRTAC1Q9NQ79 661 aa19.94■□□□□ 0.78
SHH-203ENST00000435425 LIMD1Q9UGP4 676 aa19.94■□□□□ 0.78
SHH-203ENST00000435425 USTQ9Y2C2 406 aa19.94■□□□□ 0.78
SHH-203ENST00000435425 N4BP1O75113 896 aaKnown RBP19.93■□□□□ 0.78
SHH-203ENST00000435425 POU2F2P09086 479 aa19.93■□□□□ 0.78
SHH-203ENST00000435425 FAM163BP0C2L3 166 aa19.93■□□□□ 0.78
SHH-203ENST00000435425 HAPLN1P10915 354 aaPredicted RBP19.93■□□□□ 0.78
SHH-203ENST00000435425 MYL4P12829 197 aa19.93■□□□□ 0.78
SHH-203ENST00000435425 CYP27A1Q02318 531 aa19.93■□□□□ 0.78
SHH-203ENST00000435425 MDH1BQ5I0G3 518 aa19.93■□□□□ 0.78
SHH-203ENST00000435425 PLCD3Q8N3E9 789 aa19.93■□□□□ 0.78
SHH-203ENST00000435425 ITFG1Q8TB96 612 aa19.93■□□□□ 0.78
SHH-203ENST00000435425 GPR152Q8TDT2 470 aa19.93■□□□□ 0.78
SHH-203ENST00000435425 PKMYT1Q99640 499 aa19.93■□□□□ 0.78
SHH-203ENST00000435425 RAB20Q9NX57 234 aa19.93■□□□□ 0.78
SHH-203ENST00000435425 DACH1Q9UI36 760 aa19.93■□□□□ 0.78
SHH-203ENST00000435425 MUTYHQ9UIF7 546 aa19.93■□□□□ 0.78
SHH-203ENST00000435425 MRPS23Q9Y3D9 190 aaKnown RBP19.93■□□□□ 0.78
SHH-203ENST00000435425 MYO10Q9HD67 2058 aa19.92■□□□□ 0.78
SHH-203ENST00000435425 GNA14O95837 355 aa19.92■□□□□ 0.78
SHH-203ENST00000435425 CCDC192P0DO97 292 aa19.92■□□□□ 0.78
SHH-203ENST00000435425 PTPN1P18031 435 aaKnown RBP19.92■□□□□ 0.78
SHH-203ENST00000435425 CYP2F1P24903 491 aa19.92■□□□□ 0.78
SHH-203ENST00000435425 GPR15P49685 360 aa19.92■□□□□ 0.78
SHH-203ENST00000435425 WDR44Q5JSH3 913 aa19.92■□□□□ 0.78
SHH-203ENST00000435425 CCDC183Q5T5S1 534 aa19.92■□□□□ 0.78
SHH-203ENST00000435425 CYP4A22Q5TCH4 519 aa19.92■□□□□ 0.78
SHH-203ENST00000435425 FAM171BQ6P995 826 aa19.92■□□□□ 0.78
SHH-203ENST00000435425 ST13P5Q8NFI4 369 aaPredicted RBP19.92■□□□□ 0.78
SHH-203ENST00000435425 MYLPFQ96A32 169 aa19.92■□□□□ 0.78
SHH-203ENST00000435425 DNAJC25Q9H1X3 360 aa19.92■□□□□ 0.78
SHH-203ENST00000435425 MAGEC2Q9UBF1 373 aaPredicted RBP19.92■□□□□ 0.78
SHH-203ENST00000435425 ATF6P18850 670 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 ASPAP45381 313 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 FMO5P49326 533 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 ORC1Q13415 861 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 VEPH1Q14D04 833 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 TAF12Q16514 161 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 SLC5A9Q2M3M2 681 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 SDHAF4Q5VUM1 108 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 SASS6Q6UVJ0 657 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 C4orf50Q6ZRC1 276 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 PDZD4Q76G19 769 aaPredicted RBP19.91■□□□□ 0.78
SHH-203ENST00000435425 SCN4BQ8IWT1 228 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 ZDHHC14Q8IZN3 488 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 STKLD1Q8NE28 680 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 TATDN2Q93075 761 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 TCEAL4Q96EI5 215 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 ASAH2Q9NR71 780 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 HSFX1Q9UBD0 423 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 DOCK8Q8NF50 2099 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 A0A0C4DFX4 3053 aa19.91■□□□□ 0.78
SHH-203ENST00000435425 ASGR2P07307 311 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 GJA1P17302 382 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 CD58P19256 250 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 BDNFP23560 247 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 NDST1P52848 882 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 LRMPQ12912 555 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 MAPRE1Q15691 268 aaKnown RBP19.9■□□□□ 0.78
SHH-203ENST00000435425 DDR2Q16832 855 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 RBM43Q6ZSC3 357 aaKnown RBP19.9■□□□□ 0.78
SHH-203ENST00000435425 DNAJB7Q7Z6W7 309 aaPredicted RBP19.9■□□□□ 0.78
SHH-203ENST00000435425 ACOT1Q86TX2 421 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 TRIM59Q8IWR1 403 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 MYCBPAPQ8TBZ2 947 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 FGF13Q92913 245 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 MCRS1Q96EZ8 462 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 PCED1BQ96HM7 432 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 CNOT6LQ96LI5 555 aaKnown RBP19.9■□□□□ 0.78
SHH-203ENST00000435425 BCO2Q9BYV7 579 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 NIF3L1Q9GZT8 377 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.9■□□□□ 0.78
SHH-203ENST00000435425 TMEM63CQ9P1W3 806 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.9■□□□□ 0.78
SHH-203ENST00000435425 PTPRDP23468 1912 aa19.9■□□□□ 0.78
SHH-203ENST00000435425 ZNF197O14709 1029 aa19.89■□□□□ 0.77
SHH-203ENST00000435425 LAMP2P13473 410 aa19.89■□□□□ 0.77
SHH-203ENST00000435425 CEBPBP17676 345 aa19.89■□□□□ 0.77
SHH-203ENST00000435425 ERCC5P28715 1186 aaPredicted RBP19.89■□□□□ 0.77
SHH-203ENST00000435425 CCR2P41597 374 aa19.89■□□□□ 0.77
SHH-203ENST00000435425 KCNH2Q12809 1159 aa19.89■□□□□ 0.77
SHH-203ENST00000435425 HSP90AA4PQ58FG1 418 aa19.89■□□□□ 0.77
SHH-203ENST00000435425 ITIH5Q86UX2 942 aa19.89■□□□□ 0.77
SHH-203ENST00000435425 B3GALNT2Q8NCR0 500 aa19.89■□□□□ 0.77
SHH-203ENST00000435425 PSMG2Q969U7 264 aa19.89■□□□□ 0.77
SHH-203ENST00000435425 MED10Q9BTT4 135 aa19.89■□□□□ 0.77
SHH-203ENST00000435425 EPHX3Q9H6B9 360 aa19.89■□□□□ 0.77
SHH-203ENST00000435425 ZNF334Q9HCZ1 680 aaPredicted RBP19.89■□□□□ 0.77
SHH-203ENST00000435425 ABCB6Q9NP58 842 aa19.89■□□□□ 0.77
SHH-203ENST00000435425 HMGXB4Q9UGU5 601 aa19.89■□□□□ 0.77
SHH-203ENST00000435425 CDH7Q9ULB5 785 aa19.89■□□□□ 0.77
SHH-203ENST00000435425 ASB3Q9Y575 518 aa19.89■□□□□ 0.77
SHH-203ENST00000435425 MYH10P35580 1976 aa19.88■□□□□ 0.77
SHH-203ENST00000435425 CLDN5O00501 218 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms