RNA–Protein interactions for RNA: ENST00000428962.2

THBS3-202, Transcript of thrombospondin 3, humanhuman

TSL 2

Gene THBS3, Length 1,833 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3-202ENST00000428962 CCDC77Q9BR77 488 aa14.44□□□□□ -0.1
THBS3-202ENST00000428962 DDX23Q9BUQ8 820 aaKnown RBP14.44□□□□□ -0.1
THBS3-202ENST00000428962 ZNF148Q9UQR1 794 aa14.44□□□□□ -0.1
THBS3-202ENST00000428962 SLC45A1Q9Y2W3 748 aa14.44□□□□□ -0.1
THBS3-202ENST00000428962 PLXNB2O15031 1838 aa14.44□□□□□ -0.1
THBS3-202ENST00000428962 A0A087WZ62 844 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 LRRD1A4D1F6 860 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 UNCXA6NJT0 531 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 ITGB3P05106 788 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 IQCF3P0C7M6 154 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 RDXP35241 583 aaKnown RBP14.43□□□□□ -0.1
THBS3-202ENST00000428962 RAP1GAPP47736 663 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 RAD23BP54727 409 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 PSMC1P62191 440 aaKnown RBP14.43□□□□□ -0.1
THBS3-202ENST00000428962 IFI35P80217 286 aaPredicted RBP14.43□□□□□ -0.1
THBS3-202ENST00000428962 PTPN11Q06124 597 aaPredicted RBP14.43□□□□□ -0.1
THBS3-202ENST00000428962 TMEM132DQ14C87 1099 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 AMHR2Q16671 573 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 GKAP1Q5VSY0 366 aaPredicted RBP14.43□□□□□ -0.1
THBS3-202ENST00000428962 HIBCHQ6NVY1 386 aaPredicted RBP14.43□□□□□ -0.1
THBS3-202ENST00000428962 TAPT1Q6NXT6 567 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 NT5DC4Q86YG4 428 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 ALLCQ8N6M5 410 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 DNAJC5GQ8N7S2 189 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 SLC10A4Q96EP9 437 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 FDXACB1Q9BRP7 624 aaPredicted RBP14.43□□□□□ -0.1
THBS3-202ENST00000428962 MIS12Q9H081 205 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 INTS9Q9NV88 658 aaKnown RBP14.43□□□□□ -0.1
THBS3-202ENST00000428962 ITGA11Q9UKX5 1188 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 PLXNA1Q9UIW2 1896 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 GOLGA8SH3BPF8 625 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 STRNO43815 780 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 CILPO75339 1184 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 CYP2C8P10632 490 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 KRT10P13645 584 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 ADORA2AP29274 412 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 GJA5P36382 358 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 CDKN2BP42772 138 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 VCPP55072 806 aaKnown RBP14.43□□□□□ -0.1
THBS3-202ENST00000428962 HTRA3P83110 453 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 ZNF268Q14587 947 aaPredicted RBP14.43□□□□□ -0.1
THBS3-202ENST00000428962 ACAP1Q15027 740 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 P3H1Q32P28 736 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 ATP13A4Q4VNC1 1196 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 UBAP2Q5T6F2 1119 aaKnown RBP14.43□□□□□ -0.1
THBS3-202ENST00000428962 APBB1IPQ7Z5R6 666 aaPredicted RBP14.43□□□□□ -0.1
THBS3-202ENST00000428962 ANKS1BQ7Z6G8 1248 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 CPLX4Q7Z7G2 160 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 TMEM192Q8IY95 271 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 CACNA2D3Q8IZS8 1091 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 TTC13Q8NBP0 860 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 NKD2Q969F2 451 aaPredicted RBP14.43□□□□□ -0.1
THBS3-202ENST00000428962 TMEM176AQ96HP8 235 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 TTC25Q96NG3 672 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 FAM118BQ9BPY3 351 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 ADPGKQ9BRR6 497 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 CCDC134Q9H6E4 229 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 SMYD3Q9H7B4 428 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 NINJ2Q9NZG7 142 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 C2CD2Q9Y426 696 aa14.43□□□□□ -0.1
THBS3-202ENST00000428962 DNALI1O14645 258 aaPredicted RBP14.42□□□□□ -0.1
THBS3-202ENST00000428962 STAU1O95793 577 aaKnown RBP14.42□□□□□ -0.1
THBS3-202ENST00000428962 HMGCRP04035 888 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 ITGAVP06756 1048 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 ABHD2P08910 425 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 VDRP11473 427 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 CETPP11597 493 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 TCF4P15884 667 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 STAT4Q14765 748 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 LONRF1Q17RB8 773 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 TMEM63BQ5T3F8 832 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 MTHFD1LQ6UB35 978 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 RIBC1Q8N443 379 aaPredicted RBP14.42□□□□□ -0.1
THBS3-202ENST00000428962 SLC4A11Q8NBS3 891 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 MDM1Q8TC05 714 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 AFG1LQ8WV93 481 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 ATXN2LQ8WWM7 1075 aaKnown RBP14.42□□□□□ -0.1
THBS3-202ENST00000428962 NLRP7Q8WX94 980 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 ZBTB10Q96DT7 871 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 NSRP1Q9H0G5 558 aaKnown RBP14.42□□□□□ -0.1
THBS3-202ENST00000428962 ADAM7Q9H2U9 754 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 DDX20Q9UHI6 824 aaKnown RBP14.42□□□□□ -0.1
THBS3-202ENST00000428962 DNPEPQ9ULA0 475 aa14.42□□□□□ -0.1
THBS3-202ENST00000428962 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.42□□□□□ -0.1
THBS3-202ENST00000428962 ANKRD65E5RJM6 399 aa14.41□□□□□ -0.1
THBS3-202ENST00000428962 ITGBL1O95965 494 aaPredicted RBP14.41□□□□□ -0.1
THBS3-202ENST00000428962 CPP00450 1065 aa14.41□□□□□ -0.1
THBS3-202ENST00000428962 ARF4P18085 180 aaPredicted RBP14.41□□□□□ -0.1
THBS3-202ENST00000428962 RFC1P35251 1148 aaPredicted RBP14.41□□□□□ -0.1
THBS3-202ENST00000428962 GCLCP48506 637 aaPredicted RBP14.41□□□□□ -0.1
THBS3-202ENST00000428962 SLC25A11Q02978 314 aaKnown RBP14.41□□□□□ -0.1
THBS3-202ENST00000428962 MORF4L2Q15014 288 aa14.41□□□□□ -0.1
THBS3-202ENST00000428962 KYNUQ16719 465 aa14.41□□□□□ -0.1
THBS3-202ENST00000428962 MAP1SQ66K74 1059 aaPredicted RBP14.41□□□□□ -0.1
THBS3-202ENST00000428962 ZNF410Q86VK4 478 aa14.41□□□□□ -0.1
THBS3-202ENST00000428962 XYLT1Q86Y38 959 aa14.41□□□□□ -0.1
THBS3-202ENST00000428962 P3H4Q92791 437 aa14.41□□□□□ -0.1
THBS3-202ENST00000428962 ARHGEF2Q92974 986 aaKnown RBP14.41□□□□□ -0.1
THBS3-202ENST00000428962 HPDLQ96IR7 371 aa14.41□□□□□ -0.1
THBS3-202ENST00000428962 CFAP57Q96MR6 1250 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms