RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 TMEM130Q8N3G9 435 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 MYCBPAPQ8TBZ2 947 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 KBTBD7Q8WVZ9 684 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 CYFIP2Q96F07 1278 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 ELOVL4Q9GZR5 314 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 SDCBP2Q9H190 292 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 SYNCQ9H7C4 482 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 CHST7Q9NS84 486 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 FNIP2Q9P278 1114 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 MAFFQ9ULX9 164 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 YBX2Q9Y2T7 364 aaKnown RBP10.72□□□□□ -0.69
CD44-207ENST00000425428 PCDHB5Q9Y5E4 795 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 VWA8A3KMH1 1905 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 SSU72P8A0A1W2PR75 194 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 SRGAP2BP0DMP2 458 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 LMO2P25791 158 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 HNRNPH3P31942 346 aaKnown RBP10.72□□□□□ -0.69
CD44-207ENST00000425428 PRKCIP41743 596 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 PSMC1P62191 440 aaKnown RBP10.72□□□□□ -0.69
CD44-207ENST00000425428 CDK17Q00537 523 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 CNGA2Q16280 664 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 TAF12Q16514 161 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 SLC39A12Q504Y0 691 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 RTP2Q5QGT7 225 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 TPGS2Q68CL5 300 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 CD300LGQ6UXG3 332 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 SLC47A2Q86VL8 602 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 TC2NQ8N9U0 490 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 SLC4A11Q8NBS3 891 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 TMEM35BQ8NCS4 154 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 SPPL2BQ8TCT7 592 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 SMARCD1Q96GM5 515 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 FUBP3Q96I24 572 aaKnown RBP eCLIP10.72□□□□□ -0.69
CD44-207ENST00000425428 PDLIM2Q96JY6 352 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 AGPAT1Q99943 283 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 ZBP1Q9H171 429 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 HAUS4Q9H6D7 363 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 EHD2Q9NZN4 543 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 MTRRQ9UBK8 725 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 CDY1Q9Y6F8 540 aa10.72□□□□□ -0.69
CD44-207ENST00000425428 TSC2P49815 1807 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 M0QYV0 167 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 PRRG1O14668 218 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 LSM8O95777 96 aaKnown RBP10.71□□□□□ -0.69
CD44-207ENST00000425428 FAM200BP0CF97 657 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 BRD2P25440 801 aaKnown RBP10.71□□□□□ -0.69
CD44-207ENST00000425428 ADORA2BP29275 332 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 OR1D2P34982 312 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 CLCN1P35523 988 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 TUFMP49411 452 aaKnown RBP10.71□□□□□ -0.69
CD44-207ENST00000425428 BCAT1P54687 386 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 CDR2Q01850 454 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 PLD1Q13393 1074 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 MRPL58Q14197 206 aaKnown RBP10.71□□□□□ -0.69
CD44-207ENST00000425428 MEA1Q16626 185 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 ZNF697Q5TEC3 545 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 TAF3Q5VWG9 929 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 PLPP4Q5VZY2 271 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 SCARA3Q6AZY7 606 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 DPY19L2P1Q6NXN4 242 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 PRSS55Q6UWB4 352 aaPredicted RBP10.71□□□□□ -0.69
CD44-207ENST00000425428 LRRC8AQ8IWT6 810 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 UBR7Q8N806 425 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 LNX1Q8TBB1 728 aaPredicted RBP10.71□□□□□ -0.69
CD44-207ENST00000425428 SPPL3Q8TCT6 385 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 IPO4Q8TEX9 1081 aaKnown RBP10.71□□□□□ -0.69
CD44-207ENST00000425428 BCL7CQ8WUZ0 217 aaPredicted RBP10.71□□□□□ -0.69
CD44-207ENST00000425428 ZNF606Q8WXB4 792 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 B3GALT6Q96L58 329 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 PPP1R9BQ96SB3 815 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 ZNF518BQ9C0D4 1074 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 ZCWPW1Q9H0M4 648 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 CERS4Q9HA82 394 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 FAM49BQ9NUQ9 324 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 ABI2Q9NYB9 513 aaPredicted RBP10.71□□□□□ -0.69
CD44-207ENST00000425428 GTF3C4Q9UKN8 822 aa10.71□□□□□ -0.69
CD44-207ENST00000425428 COLQQ9Y215 455 aaPredicted RBP10.71□□□□□ -0.69
CD44-207ENST00000425428 TRIM66O15016 1216 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 PNMA6AP0CW24 399 aaPredicted RBP10.7□□□□□ -0.7
CD44-207ENST00000425428 SETSIPP0DME0 302 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 SKILP12757 684 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 DESP17661 470 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 GRIK1P39086 918 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 NSFP46459 744 aaKnown RBP10.7□□□□□ -0.7
CD44-207ENST00000425428 ALDH1A3P47895 512 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 ZNF132P52740 706 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 RPL10AP62906 217 aaKnown RBP10.7□□□□□ -0.7
CD44-207ENST00000425428 KRT83P78385 493 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 BST2Q10589 180 aaKnown RBP10.7□□□□□ -0.7
CD44-207ENST00000425428 GPR17Q13304 367 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 ORC1Q13415 861 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 ARID5BQ14865 1188 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 GOLGA7BQ2TAP0 167 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 C10orf76Q5T2E6 689 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 LIN9Q5TKA1 542 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 KIAA0319Q5VV43 1072 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 ARHGAP17Q68EM7 881 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 VSTM1Q6UX27 236 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 CCDC149Q6ZUS6 474 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 TAS1R1Q7RTX1 841 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms