RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 WARSP23381 471 aaKnown RBP20.43■□□□□ 0.86
SF3A1-202ENST00000411423 GABRR2P28476 465 aa20.43■□□□□ 0.86
SF3A1-202ENST00000411423 CYP4F8P98187 520 aa20.43■□□□□ 0.86
SF3A1-202ENST00000411423 MYL7Q01449 175 aa20.43■□□□□ 0.86
SF3A1-202ENST00000411423 TSPY1Q01534 308 aa20.43■□□□□ 0.86
SF3A1-202ENST00000411423 SMARCB1Q12824 385 aa20.43■□□□□ 0.86
SF3A1-202ENST00000411423 FAM171BQ6P995 826 aa20.43■□□□□ 0.86
SF3A1-202ENST00000411423 DPH6Q7L8W6 267 aa20.43■□□□□ 0.86
SF3A1-202ENST00000411423 TMEM150AQ86TG1 271 aa20.43■□□□□ 0.86
SF3A1-202ENST00000411423 SPATA18Q8TC71 538 aa20.43■□□□□ 0.86
SF3A1-202ENST00000411423 SMARCD2Q92925 531 aa20.43■□□□□ 0.86
SF3A1-202ENST00000411423 LRRN2O75325 713 aa20.42■□□□□ 0.86
SF3A1-202ENST00000411423 PDGFRBP09619 1106 aa20.42■□□□□ 0.86
SF3A1-202ENST00000411423 LHX1P48742 406 aa20.42■□□□□ 0.86
SF3A1-202ENST00000411423 DDR2Q16832 855 aa20.42■□□□□ 0.86
SF3A1-202ENST00000411423 ZCWPW2Q504Y3 356 aa20.42■□□□□ 0.86
SF3A1-202ENST00000411423 FAM200AQ8TCP9 573 aa20.42■□□□□ 0.86
SF3A1-202ENST00000411423 LRRC3BQ96PB8 259 aa20.42■□□□□ 0.86
SF3A1-202ENST00000411423 MMS19Q96T76 1030 aa20.42■□□□□ 0.86
SF3A1-202ENST00000411423 SYT15Q9BQS2 421 aa20.42■□□□□ 0.86
SF3A1-202ENST00000411423 FOXQ1Q9C009 403 aa20.42■□□□□ 0.86
SF3A1-202ENST00000411423 TRPV4Q9HBA0 871 aa20.42■□□□□ 0.86
SF3A1-202ENST00000411423 ZFP14Q9HCL3 533 aa20.42■□□□□ 0.86
SF3A1-202ENST00000411423 GALR2O43603 387 aaPredicted RBP20.41■□□□□ 0.86
SF3A1-202ENST00000411423 AKAP3O75969 853 aa20.41■□□□□ 0.86
SF3A1-202ENST00000411423 STAU1O95793 577 aaKnown RBP20.41■□□□□ 0.86
SF3A1-202ENST00000411423 NFE2Q16621 373 aaPredicted RBP20.41■□□□□ 0.86
SF3A1-202ENST00000411423 WDR72Q3MJ13 1102 aa20.41■□□□□ 0.86
SF3A1-202ENST00000411423 SLC44A4Q53GD3 710 aa20.41■□□□□ 0.86
SF3A1-202ENST00000411423 CEP135Q66GS9 1140 aa20.41■□□□□ 0.86
SF3A1-202ENST00000411423 GUF1Q8N442 669 aaKnown RBP20.41■□□□□ 0.86
SF3A1-202ENST00000411423 SDCBP2Q9H190 292 aa20.41■□□□□ 0.86
SF3A1-202ENST00000411423 ATXN3LQ9H3M9 355 aa20.41■□□□□ 0.86
SF3A1-202ENST00000411423 DPEP3Q9H4B8 488 aa20.41■□□□□ 0.86
SF3A1-202ENST00000411423 CALUO43852 315 aaPredicted RBP20.4■□□□□ 0.86
SF3A1-202ENST00000411423 GADD45BO75293 160 aaPredicted RBP20.4■□□□□ 0.86
SF3A1-202ENST00000411423 TADA3O75528 432 aa20.4■□□□□ 0.86
SF3A1-202ENST00000411423 F11P03951 625 aa20.4■□□□□ 0.86
SF3A1-202ENST00000411423 GLULP15104 373 aa20.4■□□□□ 0.86
SF3A1-202ENST00000411423 PCSK1P29120 753 aa20.4■□□□□ 0.86
SF3A1-202ENST00000411423 RAP1GAPP47736 663 aa20.4■□□□□ 0.86
SF3A1-202ENST00000411423 STARD6P59095 220 aa20.4■□□□□ 0.86
SF3A1-202ENST00000411423 MLF2Q15773 248 aaPredicted RBP20.4■□□□□ 0.86
SF3A1-202ENST00000411423 NFIL3Q16649 462 aa20.4■□□□□ 0.86
SF3A1-202ENST00000411423 GPR158Q5T848 1215 aa20.4■□□□□ 0.86
SF3A1-202ENST00000411423 PHLDB3Q6NSJ2 640 aa20.4■□□□□ 0.86
SF3A1-202ENST00000411423 ITIH5Q86UX2 942 aa20.4■□□□□ 0.86
SF3A1-202ENST00000411423 MYLPFQ96A32 169 aa20.4■□□□□ 0.86
SF3A1-202ENST00000411423 DDX23Q9BUQ8 820 aaKnown RBP20.4■□□□□ 0.86
SF3A1-202ENST00000411423 SLITRK6Q9H5Y7 841 aa20.4■□□□□ 0.86
SF3A1-202ENST00000411423 SMYD3Q9H7B4 428 aa20.4■□□□□ 0.86
SF3A1-202ENST00000411423 FAM86C1Q9NVL1 165 aa20.4■□□□□ 0.86
SF3A1-202ENST00000411423 DLGAP2Q9P1A6 1054 aa20.4■□□□□ 0.86
SF3A1-202ENST00000411423 NXF1Q9UBU9 619 aaKnown RBP20.4■□□□□ 0.86
SF3A1-202ENST00000411423 CDH9Q9ULB4 789 aa20.4■□□□□ 0.86
SF3A1-202ENST00000411423 R3HCC1Q9Y3T6 440 aaKnown RBP20.4■□□□□ 0.86
SF3A1-202ENST00000411423 MTF2Q9Y483 593 aaPredicted RBP20.4■□□□□ 0.86
SF3A1-202ENST00000411423 OBSL1O75147 1896 aa20.39■□□□□ 0.86
SF3A1-202ENST00000411423 HEPACAM2A8MVW5 462 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 H0Y858 1186 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 STK25O00506 426 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 TACC1O75410 805 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 PRAMEF12O95522 483 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 DCNP07585 359 aaKnown RBP20.39■□□□□ 0.85
SF3A1-202ENST00000411423 CD72P21854 359 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 NR2F2P24468 414 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 CDH8P55286 799 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 FAM160A1Q05DH4 1040 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 BIRC3Q13489 604 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 TRPC3Q13507 836 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 VEPH1Q14D04 833 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 ZACNQ401N2 412 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 CFAP221Q4G0U5 840 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 ARID3BQ8IVW6 561 aaPredicted RBP20.39■□□□□ 0.85
SF3A1-202ENST00000411423 SPATA20Q8TB22 786 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 TMC2Q8TDI7 906 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 CCDC47Q96A33 483 aaKnown RBP20.39■□□□□ 0.85
SF3A1-202ENST00000411423 EEF2KMTQ96G04 330 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 SLC46A2Q9BY10 475 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 SMG9Q9H0W8 520 aaKnown RBP20.39■□□□□ 0.85
SF3A1-202ENST00000411423 VRTNQ9H8Y1 702 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 ABCB6Q9NP58 842 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 HEBP1Q9NRV9 189 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 TMEM30AQ9NV96 361 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 PTPRDP23468 1912 aa20.39■□□□□ 0.85
SF3A1-202ENST00000411423 ARNTLO00327 626 aa20.38■□□□□ 0.85
SF3A1-202ENST00000411423 PHACTR2O75167 634 aa20.38■□□□□ 0.85
SF3A1-202ENST00000411423 TRIM49P0CI25 452 aa20.38■□□□□ 0.85
SF3A1-202ENST00000411423 TRIM49CP0CI26 452 aa20.38■□□□□ 0.85
SF3A1-202ENST00000411423 ATICP31939 592 aa20.38■□□□□ 0.85
SF3A1-202ENST00000411423 PRCPP42785 496 aa20.38■□□□□ 0.85
SF3A1-202ENST00000411423 CACNA2D1P54289 1103 aa20.38■□□□□ 0.85
SF3A1-202ENST00000411423 PTPN5P54829 565 aa20.38■□□□□ 0.85
SF3A1-202ENST00000411423 NLRP12P59046 1061 aa20.38■□□□□ 0.85
SF3A1-202ENST00000411423 NCOA4Q13772 614 aa20.38■□□□□ 0.85
SF3A1-202ENST00000411423 SPOPLQ6IQ16 392 aa20.38■□□□□ 0.85
SF3A1-202ENST00000411423 SV2AQ7L0J3 742 aa20.38■□□□□ 0.85
SF3A1-202ENST00000411423 SPATA2LQ8IUW3 424 aaPredicted RBP20.38■□□□□ 0.85
SF3A1-202ENST00000411423 CCDC105Q8IYK2 499 aa20.38■□□□□ 0.85
SF3A1-202ENST00000411423 OR6B3Q8NGW1 331 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms