RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 TEX13BQ9BXU2 312 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 SLC13A1Q9BZW2 595 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 ZNF214Q9UL59 606 aaPredicted RBP13.62□□□□□ -0.23
PTPRN-202ENST00000409251 MKI67P46013 3256 aaKnown RBP13.62□□□□□ -0.23
PTPRN-202ENST00000409251 P4HBP07237 508 aaKnown RBP13.62□□□□□ -0.23
PTPRN-202ENST00000409251 PTPN4P29074 926 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 SSTR1P30872 391 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 SP2Q02086 613 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 POU5F2Q8N7G0 328 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 EIF1ADQ8N9N8 165 aaKnown RBP13.62□□□□□ -0.23
PTPRN-202ENST00000409251 SLC7A6OSQ96CW6 309 aaPredicted RBP13.62□□□□□ -0.23
PTPRN-202ENST00000409251 MIPEPQ99797 713 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 SIX2Q9NPC8 291 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 TOPORSQ9NS56 1045 aaPredicted RBP13.62□□□□□ -0.23
PTPRN-202ENST00000409251 AK5Q9Y6K8 562 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 LAMA3Q16787 3333 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 E2F8A0AVK6 867 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 ATP6V1G1O75348 118 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 GNAZP19086 355 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 RARRES1P49788 294 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 LY6KQ17RY6 165 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 ATP13A4Q4VNC1 1196 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 FOXB2Q5VYV0 432 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 C4orf50Q6ZRC1 276 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 DAW1Q8N136 415 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 ZNF333Q96JL9 665 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 MBOAT7Q96N66 472 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 TRIM55Q9BYV6 548 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 LRMDAQ9H2I8 198 aa13.62□□□□□ -0.23
PTPRN-202ENST00000409251 SAE1Q9UBE0 346 aaPredicted RBP13.62□□□□□ -0.23
PTPRN-202ENST00000409251 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.62□□□□□ -0.23
PTPRN-202ENST00000409251 QSER1Q2KHR3 1735 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 MIF4GDA9UHW6 222 aaKnown RBP13.61□□□□□ -0.23
PTPRN-202ENST00000409251 DHX15O43143 795 aaKnown RBP13.61□□□□□ -0.23
PTPRN-202ENST00000409251 CCDC22O60826 627 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 DSG3P32926 999 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 OSTNP61366 133 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 DPY19L2Q6NUT2 758 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 SLFN11Q7Z7L1 901 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 CCDC60Q8IWA6 550 aaPredicted RBP13.61□□□□□ -0.23
PTPRN-202ENST00000409251 COPS5Q92905 334 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 MPP4Q96JB8 637 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 TXLNGYQ9BZA5 131 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 NDE1Q9NXR1 346 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 LRRC42Q9Y546 428 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 LOC100653049A0A140TA62 436 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 CES2O00748 559 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 KRT34O76011 436 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 PSMG1O95456 288 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 HSD17B4P51659 736 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 RTP1P59025 263 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 TMEM132AQ24JP5 1023 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 Q3C1V9 767 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 IRGCQ6NXR0 463 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 ALYREFQ86V81 257 aaKnown RBP13.61□□□□□ -0.23
PTPRN-202ENST00000409251 AGR3Q8TD06 166 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 ART4Q93070 314 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 FAM111AQ96PZ2 611 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 C11orf70Q9BRQ4 267 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 POLR3CQ9BUI4 534 aaPredicted RBP13.61□□□□□ -0.23
PTPRN-202ENST00000409251 ROPN1BQ9BZX4 212 aaPredicted RBP13.61□□□□□ -0.23
PTPRN-202ENST00000409251 ROPN1Q9HAT0 212 aaPredicted RBP13.61□□□□□ -0.23
PTPRN-202ENST00000409251 AAASQ9NRG9 546 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 ANKFY1Q9P2R3 1169 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 NEU2Q9Y3R4 380 aa13.61□□□□□ -0.23
PTPRN-202ENST00000409251 MAGEA13PA6NCF6 341 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 LRRIQ4A6NIV6 560 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 GJB1P08034 283 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 SPATA31D3P0C874 917 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 SLC34A1Q06495 639 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 EDRF1Q3B7T1 1238 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 TMCO4Q5TGY1 634 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 SPATA31D4Q6ZUB0 917 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 ZNF720Q7Z2F6 126 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 CLNKQ7Z7G1 428 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 LCA5Q86VQ0 697 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 MIPOL1Q8TD10 442 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 NSUN6Q8TEA1 469 aaKnown RBP13.6□□□□□ -0.23
PTPRN-202ENST00000409251 ACAD9Q9H845 621 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 LARSQ9P2J5 1176 aaKnown RBP13.6□□□□□ -0.23
PTPRN-202ENST00000409251 SNCAIPQ9Y6H5 919 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 F5H423 210 aaPredicted RBP13.6□□□□□ -0.23
PTPRN-202ENST00000409251 ZNF862O60290 1169 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 PDE5AO76074 875 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 FAM200BP0CF97 657 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 T-ENOLP0DO92 83 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 MYL2P10916 166 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 ARSEP51690 589 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 LPCAT4Q643R3 524 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 HAUS6Q7Z4H7 955 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 GLIS1Q8NBF1 620 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 RAB3IL1Q8TBN0 382 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 TRAPPC12Q8WVT3 735 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 ZNF75CPQ92670 426 aaPredicted RBP13.6□□□□□ -0.23
PTPRN-202ENST00000409251 ZNF184Q99676 751 aaPredicted RBP13.6□□□□□ -0.23
PTPRN-202ENST00000409251 SYNCQ9H7C4 482 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 KIAA1586Q9HCI6 787 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 SLC17A7Q9P2U7 560 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 FAM237BA0A1B0GVD1 139 aa13.6□□□□□ -0.23
PTPRN-202ENST00000409251 SUPT3HO75486 399 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms