RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 ZNF577Q9BSK1 485 aa10.4□□□□□ -0.74
PTCHD4-202ENST00000398738 TMEM120AQ9BXJ8 343 aa10.4□□□□□ -0.74
PTCHD4-202ENST00000398738 SMYD3Q9H7B4 428 aa10.4□□□□□ -0.74
PTCHD4-202ENST00000398738 ZNF395Q9H8N7 513 aaPredicted RBP10.4□□□□□ -0.74
PTCHD4-202ENST00000398738 GINM1Q9NU53 330 aa10.4□□□□□ -0.74
PTCHD4-202ENST00000398738 CCDC160A6NGH7 325 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 SORBS3O60504 671 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 GZMAP12544 262 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 BGNP21810 368 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 GCLCP48506 637 aaPredicted RBP10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 NRLP54845 237 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 MCL1Q07820 350 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 LBRQ14739 615 aaKnown RBP10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 ACAD10Q6JQN1 1059 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 DAW1Q8N136 415 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 DENND1AQ8TEH3 1009 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 MAIP1Q8WWC4 291 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 NT5C1BQ96P26 610 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 NACC1Q96RE7 527 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 POLR3CQ9BUI4 534 aaPredicted RBP10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 TSSK1BQ9BXA7 367 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 KANSL3Q9P2N6 904 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 UVRAGQ9P2Y5 699 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 PPARGC1AQ9UBK2 798 aaKnown RBP10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 POLLQ9UGP5 575 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 ASB3Q9Y575 518 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 E7ENQ6 273 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 MYL2P10916 166 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 SREBF1P36956 1147 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 CCNFP41002 786 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 NSFP46459 744 aaKnown RBP10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 AP3B2Q13367 1082 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 SMAD1Q15797 465 aaKnown RBP10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 SLC45A4Q5BKX6 768 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 C1orf220Q5T0J3 134 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 SPOPLQ6IQ16 392 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 C3orf62Q6ZUJ4 267 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 ARHGAP22Q7Z5H3 698 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 C12orf50Q8NA57 414 aaPredicted RBP10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 FAM136AQ96C01 138 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 TUBGCP5Q96RT8 1024 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 UNC45AQ9H3U1 944 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 MANSC1Q9H8J5 431 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 LARSQ9P2J5 1176 aaKnown RBP10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 PAPPAQ13219 1627 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 ANKRD33BA6NCL7 494 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 ARHGAP42A6NI28 874 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 HADHBP55084 474 aaKnown RBP10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 ALCAMQ13740 583 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 Q4G0T1 1027 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 FAM102BQ5T8I3 360 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 RHPN2Q8IUC4 686 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 SHKBP1Q8TBC3 707 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 SH3TC2Q8TF17 1288 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 PYROXD1Q8WU10 500 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 CCDC124Q96CT7 223 aaKnown RBP10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 SPATA31A1Q5TZJ5 1347 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 DLEC1Q9Y238 1755 aa10.39□□□□□ -0.75
PTCHD4-202ENST00000398738 MROH7Q68CQ1 1323 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 MEI4A8MW99 385 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 C2CD2LO14523 706 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 NDUFB10O96000 172 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 LMNAP02545 664 aaKnown RBP10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 CAV1Q03135 178 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 VPS72Q15906 364 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 HAUS6Q7Z4H7 955 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 PALM2Q8IXS6 379 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 ZNF184Q99676 751 aaPredicted RBP10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 MECRQ9BV79 373 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 NMUR2Q9GZQ4 415 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 SYNCQ9H7C4 482 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 KRT82Q9NSB4 513 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 NARFQ9UHQ1 456 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 KIAA1551Q9HCM1 1747 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 IGKV6D-41A0A0C4DH26 115 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 MAGEA13PA6NCF6 341 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 TK2O00142 265 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 PRELPP51888 382 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 SP4Q02446 784 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 SNRNP35Q16560 246 aaKnown RBP10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 TBCELQ5QJ74 424 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 MTHFD1LQ6UB35 978 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 ZBTB33Q86T24 672 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 CTAGE3PQ8IX95 158 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 MORC4Q8TE76 937 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 USP6NLQ92738 828 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 NMD3Q96D46 503 aaKnown RBP10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 RILPQ96NA2 401 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 GLT8D2Q9H1C3 349 aa10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 SMG5Q9UPR3 1016 aaKnown RBP10.38□□□□□ -0.75
PTCHD4-202ENST00000398738 FCHO1O14526 889 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 ATP2A1O14983 1001 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 TBX3O15119 743 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 TLR3O15455 904 aaKnown RBP10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 KRT1P04264 644 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 LYNP07948 512 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 SCNN1BP51168 640 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 ALDH18A1P54886 795 aaKnown RBP10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 ARL4CP56559 192 aa10.37□□□□□ -0.75
PTCHD4-202ENST00000398738 SGSM1Q2NKQ1 1148 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms