RNA–Protein interactions for RNA: ENST00000394963.8

SMARCD1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD1, Length 3,658 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-202ENST00000394963 GRK7Q8WTQ7 553 aa16.75■□□□□ 0.27
SMARCD1-202ENST00000394963 CABS1Q96KC9 395 aa16.75■□□□□ 0.27
SMARCD1-202ENST00000394963 CPXM1Q96SM3 734 aa16.75■□□□□ 0.27
SMARCD1-202ENST00000394963 COL2A1P02458 1487 aaPredicted RBP16.75■□□□□ 0.27
SMARCD1-202ENST00000394963 KIAA0391O15091 583 aaKnown RBP16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 MBTD1Q05BQ5 628 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 TTMPQ5BVD1 217 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 NOTUMQ6P988 496 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 SCN4BQ8IWT1 228 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 ATP6V1G3Q96LB4 118 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 VTA1Q9NP79 307 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 INTS9Q9NV88 658 aaKnown RBP16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 TRPA1O75762 1119 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 MICAL2O94851 1124 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 C22orf31O95567 290 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 BYSLQ13895 437 aaKnown RBP16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 PPP2R5EQ16537 467 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 SLC10A6Q3KNW5 377 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 PTPN20Q4JDL3 420 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 FAM131BQ86XD5 332 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 SIX6OS1Q8N1H7 587 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 CALR3Q96L12 384 aaKnown RBP16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 GAD1Q99259 594 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 CXCL16Q9H2A7 254 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 CPSF3Q9UKF6 684 aaKnown RBP16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 NUDT5Q9UKK9 219 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 PRG3Q9Y2Y8 225 aaPredicted RBP16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 PCDHA3Q9Y5H8 950 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 EVPLQ92817 2033 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 EXOC1LA0A1B0GW35 172 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 DCDC2CA8MYV0 355 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 TULP2O00295 520 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 MCF2LO15068 1137 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 B3GAT3O94766 335 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 MMP3P08254 477 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 PDIA2Q13087 525 aaKnown RBP16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 NFIL3Q16649 462 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 DCAF6Q58WW2 860 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 TRIM72Q6ZMU5 477 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 FAM47EQ6ZV65 393 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 KDELC2Q7Z4H8 507 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 RXFP2Q8WXD0 754 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 PTPN18Q99952 460 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 CTNNAL1Q9UBT7 734 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 CEP290O15078 2479 aa16.74■□□□□ 0.27
SMARCD1-202ENST00000394963 BRCA2P51587 3418 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 CLDN5O00501 218 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 SAT1P21673 171 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 GNL1P36915 607 aaPredicted RBP16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 SLC26A2P50443 739 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 FAM117BQ6P1L5 589 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 ATL2Q8NHH9 583 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 SPATA18Q8TC71 538 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 MAIP1Q8WWC4 291 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 CFAP36Q96G28 342 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 RBM15Q96T37 977 aaKnown RBP eCLIP16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 LRRC37AA6NMS7 1700 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 IVLP07476 585 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 EIF4BP23588 611 aaKnown RBP16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 RTP1P59025 263 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 ACTL9Q8TC94 416 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 ZFYVE28Q9HCC9 887 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 NR2E3Q9Y5X4 410 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 MROH7Q68CQ1 1323 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 AGPSO00116 658 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 ZC3H11AO75152 810 aaKnown RBP eCLIP16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 HSPA6P17066 643 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 NPNTQ6UXI9 565 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 FBXL18Q96ME1 805 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 PDZD7Q9H5P4 517 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 GDF3Q9NR23 364 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 KCNH4Q9UQ05 1017 aa16.73■□□□□ 0.27
SMARCD1-202ENST00000394963 MOCS2O96007 188 aaPredicted RBP16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 CD48P09326 243 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 HOXC6P09630 235 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 RBP3P10745 1247 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 IRAK1P51617 712 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 EIF3EP60228 445 aaKnown RBP16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 IFI35P80217 286 aaPredicted RBP16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 HTRA3P83110 453 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 FSCN1Q16658 493 aaKnown RBP16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 DPY19L2P1Q6NXN4 242 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 P3H4Q92791 437 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 RBM41Q96IZ5 413 aaKnown RBP16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 AGAP3Q96P47 875 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 MRPL45Q9BRJ2 306 aaKnown RBP16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 CITO14578 2027 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 C17orf102A2RUQ5 167 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 MYBL1P10243 752 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 OTUD4Q01804 1114 aaKnown RBP16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 DHX34Q14147 1143 aaKnown RBP16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 DUSP28Q4G0W2 176 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 OLFML2BQ68BL8 750 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 CCDC62Q6P9F0 684 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 APPL2Q8NEU8 664 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 L3MBTL3Q96JM7 780 aaPredicted RBP16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 NKIRAS1Q9NYS0 192 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 IL18RAPO95256 599 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 STX2P32856 288 aa16.72■□□□□ 0.27
SMARCD1-202ENST00000394963 TARBP2Q15633 366 aaKnown RBP16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms