RNA–Protein interactions for RNA: ENST00000381020.7

CDX2-201, Transcript of caudal type homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX2, Length 4,053 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2-201ENST00000381020 PDE1BQ01064 536 aa13.15□□□□□ -0.3
CDX2-201ENST00000381020 C1QBPQ07021 282 aaKnown RBP13.15□□□□□ -0.3
CDX2-201ENST00000381020 TTMPQ5BVD1 217 aa13.15□□□□□ -0.3
CDX2-201ENST00000381020 RWDD4Q6NW29 188 aaKnown RBP13.15□□□□□ -0.3
CDX2-201ENST00000381020 ABI1Q8IZP0 508 aa13.15□□□□□ -0.3
CDX2-201ENST00000381020 DDX23Q9BUQ8 820 aaKnown RBP13.15□□□□□ -0.3
CDX2-201ENST00000381020 IFT122Q9HBG6 1241 aa13.15□□□□□ -0.3
CDX2-201ENST00000381020 RFC1P35251 1148 aaPredicted RBP13.15□□□□□ -0.3
CDX2-201ENST00000381020 GNL1P36915 607 aaPredicted RBP13.15□□□□□ -0.3
CDX2-201ENST00000381020 PSMC4P43686 418 aa13.15□□□□□ -0.3
CDX2-201ENST00000381020 OTUD4Q01804 1114 aaKnown RBP13.15□□□□□ -0.3
CDX2-201ENST00000381020 ZNF844Q08AG5 666 aa13.15□□□□□ -0.3
CDX2-201ENST00000381020 CCDC6Q16204 474 aa13.15□□□□□ -0.3
CDX2-201ENST00000381020 METTL23Q86XA0 190 aa13.15□□□□□ -0.3
CDX2-201ENST00000381020 APOBEC3GQ9HC16 384 aaKnown RBP13.15□□□□□ -0.3
CDX2-201ENST00000381020 CES2O00748 559 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 STRNO43815 780 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 CSPG5O95196 566 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 C4BPAP04003 597 aaKnown RBP13.14□□□□□ -0.31
CDX2-201ENST00000381020 ARL2P36404 184 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 TAS2R40P59535 323 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 NOMO3P69849 1222 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 ITKQ08881 620 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 DCAF6Q58WW2 860 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 BORCS6Q96GS4 357 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 TMBIM4Q9HC24 238 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 NOCTQ9UK39 431 aaKnown RBP13.14□□□□□ -0.31
CDX2-201ENST00000381020 TSPAN16Q9UKR8 245 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 COMMD10Q9Y6G5 202 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 BCORQ6W2J9 1755 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 RRN3P2A6NIE6 340 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 PSTPIP1O43586 416 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 RPS6KA5O75582 802 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 ASS1P00966 412 aaKnown RBP13.14□□□□□ -0.31
CDX2-201ENST00000381020 CYP1A2P05177 515 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 GPD1P21695 349 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 ANKRD20A3Q5VUR7 823 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 SCUBE3Q8IX30 993 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 RXFP2Q8WXD0 754 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 CHMP6Q96FZ7 201 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 ZNF560Q96MR9 790 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 EPN3Q9H201 632 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 DNPEPQ9ULA0 475 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 CHMP2BQ9UQN3 213 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 TIMM13Q9Y5L4 95 aaPredicted RBP13.14□□□□□ -0.31
CDX2-201ENST00000381020 C10orf71Q711Q0 1435 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 A0A087WUV0 522 aaPredicted RBP13.14□□□□□ -0.31
CDX2-201ENST00000381020 AARSP49588 968 aaKnown RBP eCLIP13.14□□□□□ -0.31
CDX2-201ENST00000381020 TFDP3Q5H9I0 405 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 ZNF473Q8WTR7 871 aaKnown RBP13.14□□□□□ -0.31
CDX2-201ENST00000381020 GTF3C2Q8WUA4 911 aaPredicted RBP13.14□□□□□ -0.31
CDX2-201ENST00000381020 RILPQ96NA2 401 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 TINF2Q9BSI4 451 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 KLC2Q9H0B6 622 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 NEUROG2Q9H2A3 272 aa13.14□□□□□ -0.31
CDX2-201ENST00000381020 TPX2Q9ULW0 747 aaKnown RBP13.14□□□□□ -0.31
CDX2-201ENST00000381020 DDX3YO15523 660 aaKnown RBP13.13□□□□□ -0.31
CDX2-201ENST00000381020 ARF4P18085 180 aaPredicted RBP13.13□□□□□ -0.31
CDX2-201ENST00000381020 SPOCD1Q6ZMY3 1216 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 TRMT10CQ7L0Y3 403 aaKnown RBP13.13□□□□□ -0.31
CDX2-201ENST00000381020 EXD1Q8NHP7 514 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 TTC17Q96AE7 1141 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 ZBED3Q96IU2 234 aaPredicted RBP13.13□□□□□ -0.31
CDX2-201ENST00000381020 TNIP3Q96KP6 325 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 PITPNM3Q9BZ71 974 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 VTA1Q9NP79 307 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 ZNF112Q9UJU3 913 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.13□□□□□ -0.31
CDX2-201ENST00000381020 BTBD19C9JJ37 291 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 I3L4J1 428 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 CFHP08603 1231 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 RARGP13631 454 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 ACAT1P24752 427 aaKnown RBP13.13□□□□□ -0.31
CDX2-201ENST00000381020 IFI35P80217 286 aaPredicted RBP13.13□□□□□ -0.31
CDX2-201ENST00000381020 AP1B1Q10567 949 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 PDZD4Q76G19 769 aaPredicted RBP13.13□□□□□ -0.31
CDX2-201ENST00000381020 C12orf29Q8N999 325 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 AVENQ9NQS1 362 aaPredicted RBP13.13□□□□□ -0.31
CDX2-201ENST00000381020 ARAP2Q8WZ64 1704 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 TMEM120BA0PK00 339 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 SHBGP04278 402 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 VDRP11473 427 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 ETS1P14921 441 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 KYAT1Q16773 422 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 SPOUT1Q5T280 376 aaKnown RBP13.13□□□□□ -0.31
CDX2-201ENST00000381020 HEATR6Q6AI08 1181 aaKnown RBP13.13□□□□□ -0.31
CDX2-201ENST00000381020 LENG1Q96BZ8 264 aaPredicted RBP13.13□□□□□ -0.31
CDX2-201ENST00000381020 AGAP3Q96P47 875 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 DCLK3Q9C098 648 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 MYH15Q9Y2K3 1946 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 TTLL13PA6NNM8 815 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 TCP11X1B4DZS4 312 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 CDH16O75309 829 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 TROVE2P10155 538 aaKnown RBP eCLIP13.13□□□□□ -0.31
CDX2-201ENST00000381020 ICAM3P32942 547 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 CACNB2Q08289 660 aaPredicted RBP13.13□□□□□ -0.31
CDX2-201ENST00000381020 PLPPR4Q7Z2D5 763 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 ZC3H3Q8IXZ2 948 aaKnown RBP13.13□□□□□ -0.31
CDX2-201ENST00000381020 TTC39CQ8N584 583 aa13.13□□□□□ -0.31
CDX2-201ENST00000381020 GIMAP7Q8NHV1 300 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms