RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 DUX4L5P0CJ88 424 aa12.93□□□□□ -0.34
CHD3-203ENST00000380358 DUX4L6P0CJ89 424 aa12.93□□□□□ -0.34
CHD3-203ENST00000380358 DUX4L7P0CJ90 424 aa12.93□□□□□ -0.34
CHD3-203ENST00000380358 PYGMP11217 842 aa12.93□□□□□ -0.34
CHD3-203ENST00000380358 STX3Q13277 289 aa12.93□□□□□ -0.34
CHD3-203ENST00000380358 SERAC1Q96JX3 654 aa12.93□□□□□ -0.34
CHD3-203ENST00000380358 SLITRK1Q96PX8 696 aa12.93□□□□□ -0.34
CHD3-203ENST00000380358 DUX4Q9UBX2 424 aa12.93□□□□□ -0.34
CHD3-203ENST00000380358 HACL1Q9UJ83 578 aa12.93□□□□□ -0.34
CHD3-203ENST00000380358 BLMP54132 1417 aaPredicted RBP12.93□□□□□ -0.34
CHD3-203ENST00000380358 VWA5AO00534 786 aa12.93□□□□□ -0.34
CHD3-203ENST00000380358 HLA-DQA1Q5Y7H0 255 aa12.93□□□□□ -0.34
CHD3-203ENST00000380358 LINC00301Q8NCQ3 95 aa12.93□□□□□ -0.34
CHD3-203ENST00000380358 TRIM51Q9BSJ1 452 aa12.93□□□□□ -0.34
CHD3-203ENST00000380358 SNX6Q9UNH7 406 aa12.93□□□□□ -0.34
CHD3-203ENST00000380358 ARAP3Q8WWN8 1544 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 PDZK1P1A8MUH7 402 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 PRPF39Q86UA1 669 aaKnown RBP12.92□□□□□ -0.34
CHD3-203ENST00000380358 C9orf72Q96LT7 481 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 GOLPH3LQ9H4A5 285 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 AFF2P51816 1311 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 ASXL2Q76L83 1435 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 COL17A1Q9UMD9 1497 aaPredicted RBP12.92□□□□□ -0.34
CHD3-203ENST00000380358 KIF1CO43896 1103 aaKnown RBP12.92□□□□□ -0.34
CHD3-203ENST00000380358 SCGNO76038 276 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 EIF2S1P05198 315 aaKnown RBP12.92□□□□□ -0.34
CHD3-203ENST00000380358 CYP2C9P11712 490 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 HALP42357 657 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 HIRAP54198 1017 aaPredicted RBP12.92□□□□□ -0.34
CHD3-203ENST00000380358 EIF2B5Q13144 721 aaKnown RBP12.92□□□□□ -0.34
CHD3-203ENST00000380358 COG2Q14746 738 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 CENPLQ8N0S6 344 aaPredicted RBP12.92□□□□□ -0.34
CHD3-203ENST00000380358 SEMA4DQ92854 862 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 APOL2Q9BQE5 337 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 OLFML3Q9NRN5 406 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 ABHD10Q9NUJ1 306 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 TIPRLO75663 272 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 ST13P50502 369 aaKnown RBP12.92□□□□□ -0.34
CHD3-203ENST00000380358 LRRC74BQ6ZQY2 392 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 DENND5BQ6ZUT9 1274 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 OSBPL9Q96SU4 736 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 CYLDQ9NQC7 956 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 ANAPC2Q9UJX6 822 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 STX7O15400 261 aaKnown RBP12.92□□□□□ -0.34
CHD3-203ENST00000380358 GRK3P35626 688 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 NCOA4Q13772 614 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 PPP4R3CPQ6ZMV5 832 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 COL26A1Q96A83 441 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 TSPAN17Q96FV3 270 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 SOHLH2Q9NX45 425 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 UBP1Q9NZI7 540 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 STOML1Q9UBI4 398 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 AP3B1O00203 1094 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 TMC7Q7Z402 723 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 CATSPERBQ9H7T0 1116 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 SNAPC2Q13487 334 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 CCSAPQ6IQ19 270 aaPredicted RBP12.92□□□□□ -0.34
CHD3-203ENST00000380358 RDM1Q8NG50 284 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 WDCPQ9H6R7 721 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 KRCC1Q9NPI7 259 aaPredicted RBP12.92□□□□□ -0.34
CHD3-203ENST00000380358 SATB2Q9UPW6 733 aa12.92□□□□□ -0.34
CHD3-203ENST00000380358 RUVBL2Q9Y230 463 aaKnown RBP12.92□□□□□ -0.34
CHD3-203ENST00000380358 RBM7Q9Y580 266 aaKnown RBP12.92□□□□□ -0.34
CHD3-203ENST00000380358 OR6A2O95222 327 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 NUDT2P50583 147 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 NECAB2Q7Z6G3 386 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 TLK2Q86UE8 772 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 CD209Q9NNX6 404 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 GGA3Q9NZ52 723 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 SH3BP4Q9P0V3 963 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 SYCP2Q9BX26 1530 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 MGAT4DA6NG13 374 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 AP3D1O14617 1153 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 MFAP3LO75121 409 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 CSDE1O75534 798 aaKnown RBP12.91□□□□□ -0.34
CHD3-203ENST00000380358 ZNF786Q8N393 782 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 KIF2BQ8N4N8 673 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 PGLYRP2Q96PD5 576 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 MED15Q96RN5 788 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 SMARCAL1Q9NZC9 954 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 GMNCA6NCL1 334 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 STXBP3O00186 592 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 MYBL1P10243 752 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 VCLP18206 1134 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 ATP6V1B2P21281 511 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 RRM2P31350 389 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 C2CD6Q53TS8 623 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 RNF180Q86T96 592 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 NLRP14Q86W24 1093 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 PALLDQ8WX93 1383 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 MYO3BQ8WXR4 1341 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 CASTOR2A6NHX0 329 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 CCDC22O60826 627 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 RPN2P04844 631 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 RBP5P82980 135 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 RNF19BQ6ZMZ0 732 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 VSTM4Q8IW00 320 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 SMPD4Q9NXE4 827 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 DYRK1BQ9Y463 629 aa12.91□□□□□ -0.34
CHD3-203ENST00000380358 TRIM3O75382 744 aaPredicted RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms