RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 SMIM22K7EJ46 135 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 GNAI2P04899 355 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 PIM1P11309 404 aaPredicted RBP2.85□□□□□ -1.95
VPS13A-206ENST00000376646 LILRA4P59901 499 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 COL23A1Q86Y22 540 aaPredicted RBP2.85□□□□□ -1.95
VPS13A-206ENST00000376646 FAM109AQ8N4B1 249 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 PLBD2Q8NHP8 589 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 SLC35A4Q96G79 324 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 OSBPL9Q96SU4 736 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 BRINP2Q9C0B6 783 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 WDCPQ9H6R7 721 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 HOMER2Q9NSB8 354 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 PNPOQ9NVS9 261 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 EHD3Q9NZN3 535 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 SH3BP4Q9P0V3 963 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 hCG_1984214I3L0E3 225 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 ZNF213O14771 459 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 UNC5CO95185 931 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 CHEK2O96017 543 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 CELA2AP08217 269 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 MYBP10242 640 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 ZNF81P51508 661 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 TREML2Q5T2D2 321 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 ZBTB46Q86UZ6 589 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 GRAMD1CQ8IYS0 662 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 CPA4Q9UI42 421 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 SSX2IPQ9Y2D8 614 aa2.85□□□□□ -1.95
VPS13A-206ENST00000376646 MRPS17Q9Y2R5 130 aaKnown RBP2.85□□□□□ -1.95
VPS13A-206ENST00000376646 TARM1B6A8C7 271 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 DTNBO60941 627 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 PRKCGP05129 697 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 FESP07332 822 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 IL6RP08887 468 aaPredicted RBP2.84□□□□□ -1.95
VPS13A-206ENST00000376646 FTH1P19P0C7X4 201 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 PF4V1P10720 104 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 ITGB6P18564 788 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 MPGP29372 298 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 CYP2C18P33260 490 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 SOX8P57073 446 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 NKX6-1P78426 367 aaPredicted RBP2.84□□□□□ -1.95
VPS13A-206ENST00000376646 TCF15Q12870 199 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 ARHGAP40Q5TG30 622 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 FAM160B1Q5W0V3 765 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 ZNF66Q6ZN08 573 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 BHLHA9Q7RTU4 235 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 VGLL2Q8N8G2 317 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 REPS1Q96D71 796 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 HOOK2Q96ED9 719 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 MVB12AQ96EY5 273 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 NT5C1BQ96P26 610 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 ALG8Q9BVK2 526 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 ARHGEF3Q9NR81 526 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 AASDHPPTQ9NRN7 309 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 SERTAD4Q9NUC0 356 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 HESX1Q9UBX0 185 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 ZDHHC8Q9ULC8 765 aa2.84□□□□□ -1.95
VPS13A-206ENST00000376646 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP2.84□□□□□ -1.95
VPS13A-206ENST00000376646 H0YIZ8 118 aa2.84□□□□□ -1.96
VPS13A-206ENST00000376646 NDUFB7P17568 137 aa2.84□□□□□ -1.96
VPS13A-206ENST00000376646 ENGP17813 658 aa2.84□□□□□ -1.96
VPS13A-206ENST00000376646 KRTAP10-11P60412 298 aa2.84□□□□□ -1.96
VPS13A-206ENST00000376646 BMPR2Q13873 1038 aa2.84□□□□□ -1.96
VPS13A-206ENST00000376646 SRSF7Q16629 238 aaKnown RBP eCLIP2.84□□□□□ -1.96
VPS13A-206ENST00000376646 KHDC1LQ5JSQ8 128 aa2.84□□□□□ -1.96
VPS13A-206ENST00000376646 TMEM240Q5SV17 173 aa2.84□□□□□ -1.96
VPS13A-206ENST00000376646 THEMIS2Q5TEJ8 643 aa2.84□□□□□ -1.96
VPS13A-206ENST00000376646 ZNF280BQ86YH2 543 aa2.84□□□□□ -1.96
VPS13A-206ENST00000376646 ANKS1AQ92625 1134 aa2.84□□□□□ -1.96
VPS13A-206ENST00000376646 CHMP4CQ96CF2 233 aa2.84□□□□□ -1.96
VPS13A-206ENST00000376646 LINC01548A6NM66 108 aa2.83□□□□□ -1.96
VPS13A-206ENST00000376646 TISP43B9A030 160 aa2.83□□□□□ -1.96
VPS13A-206ENST00000376646 GCOM1H8Y6P7 765 aaPredicted RBP2.83□□□□□ -1.96
VPS13A-206ENST00000376646 SLC16A6O15403 523 aa2.83□□□□□ -1.96
VPS13A-206ENST00000376646 PDE8BO95263 885 aa2.83□□□□□ -1.96
VPS13A-206ENST00000376646 ARIH2O95376 493 aa2.83□□□□□ -1.96
VPS13A-206ENST00000376646 VNN1O95497 513 aa2.83□□□□□ -1.96
VPS13A-206ENST00000376646 KCNJ5P48544 419 aa2.83□□□□□ -1.96
VPS13A-206ENST00000376646 NEK2P51955 445 aa2.83□□□□□ -1.96
VPS13A-206ENST00000376646 LONRF3Q496Y0 759 aa2.83□□□□□ -1.96
VPS13A-206ENST00000376646 RGS7BPQ6MZT1 257 aaPredicted RBP2.83□□□□□ -1.96
VPS13A-206ENST00000376646 NAPRTQ6XQN6 538 aa2.83□□□□□ -1.96
VPS13A-206ENST00000376646 ZNF551Q7Z340 670 aaPredicted RBP2.83□□□□□ -1.96
VPS13A-206ENST00000376646 SCARB1Q8WTV0 552 aa2.83□□□□□ -1.96
VPS13A-206ENST00000376646 ATG4AQ8WYN0 398 aa2.83□□□□□ -1.96
VPS13A-206ENST00000376646 R3HDM4Q96D70 268 aa2.83□□□□□ -1.96
VPS13A-206ENST00000376646 LRGUKQ96M69 825 aa2.83□□□□□ -1.96
VPS13A-206ENST00000376646 P2RX7Q99572 595 aaKnown RBP2.83□□□□□ -1.96
VPS13A-206ENST00000376646 CGRRF1Q99675 332 aa2.83□□□□□ -1.96
VPS13A-206ENST00000376646 QTRT1Q9BXR0 403 aaKnown RBP2.83□□□□□ -1.96
VPS13A-206ENST00000376646 DLL3Q9NYJ7 618 aa2.83□□□□□ -1.96
VPS13A-206ENST00000376646 TP73O15350 636 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 GRPP07492 148 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 FAM163BP0C2L3 166 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 PRR35P0CG20 571 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 PXNP49023 591 aaPredicted RBP2.82□□□□□ -1.96
VPS13A-206ENST00000376646 CYP4F2P78329 520 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 GRM1Q13255 1194 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 SUPT20HL1Q3ZLR7 823 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 PLAC9Q5JTB6 97 aa2.82□□□□□ -1.96
VPS13A-206ENST00000376646 EPHA10Q5JZY3 1008 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms