RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 DRG2P55039 364 aaKnown RBP16.48■□□□□ 0.23
CCDC40-202ENST00000374876 TFDP1Q14186 410 aa16.48■□□□□ 0.23
CCDC40-202ENST00000374876 CCDC137Q6PK04 289 aaKnown RBP16.48■□□□□ 0.23
CCDC40-202ENST00000374876 SRLQ86TD4 932 aa16.48■□□□□ 0.23
CCDC40-202ENST00000374876 RTN4RL1Q86UN2 441 aaPredicted RBP16.48■□□□□ 0.23
CCDC40-202ENST00000374876 CPNE8Q86YQ8 564 aa16.48■□□□□ 0.23
CCDC40-202ENST00000374876 SLC13A5Q86YT5 568 aaPredicted RBP16.48■□□□□ 0.23
CCDC40-202ENST00000374876 TRIM11Q96F44 468 aa16.48■□□□□ 0.23
CCDC40-202ENST00000374876 ZBTB45Q96K62 511 aaPredicted RBP16.48■□□□□ 0.23
CCDC40-202ENST00000374876 TARS2Q9BW92 718 aaKnown RBP16.48■□□□□ 0.23
CCDC40-202ENST00000374876 ZDHHC18Q9NUE0 388 aa16.48■□□□□ 0.23
CCDC40-202ENST00000374876 ANAPC7Q9UJX3 599 aa16.48■□□□□ 0.23
CCDC40-202ENST00000374876 SNX24Q9Y343 169 aa16.48■□□□□ 0.23
CCDC40-202ENST00000374876 RRP15Q9Y3B9 282 aaKnown RBP16.48■□□□□ 0.23
CCDC40-202ENST00000374876 PPFIA2O75334 1257 aa16.47■□□□□ 0.23
CCDC40-202ENST00000374876 MYBL1P10243 752 aa16.47■□□□□ 0.23
CCDC40-202ENST00000374876 GBP1P32455 592 aa16.47■□□□□ 0.23
CCDC40-202ENST00000374876 PTGIRP43119 386 aa16.47■□□□□ 0.23
CCDC40-202ENST00000374876 NSFP46459 744 aaKnown RBP16.47■□□□□ 0.23
CCDC40-202ENST00000374876 PLTPP55058 493 aa16.47■□□□□ 0.23
CCDC40-202ENST00000374876 WNT7BP56706 349 aa16.47■□□□□ 0.23
CCDC40-202ENST00000374876 FAM109BQ6ICB4 259 aaPredicted RBP16.47■□□□□ 0.23
CCDC40-202ENST00000374876 CRELD2Q6UXH1 353 aaPredicted RBP16.47■□□□□ 0.23
CCDC40-202ENST00000374876 MCOLN2Q8IZK6 566 aa16.47■□□□□ 0.23
CCDC40-202ENST00000374876 CPA5Q8WXQ8 436 aa16.47■□□□□ 0.23
CCDC40-202ENST00000374876 RUNDC3BQ96NL0 473 aa16.47■□□□□ 0.23
CCDC40-202ENST00000374876 HAPLN2Q9GZV7 340 aa16.47■□□□□ 0.23
CCDC40-202ENST00000374876 PTPRJQ12913 1337 aa16.47■□□□□ 0.23
CCDC40-202ENST00000374876 ABHD14A-ACY1A0A1B0GW23 586 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.46■□□□□ 0.23
CCDC40-202ENST00000374876 GRXCR1A8MXD5 290 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 INO80B-WBP1J3KQ70 363 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 ENPP3O14638 875 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 MGEA5O60502 916 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 IBSPP21815 317 aaPredicted RBP16.46■□□□□ 0.23
CCDC40-202ENST00000374876 PHKA2P46019 1235 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 DEFB103AP81534 67 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 SPDYCQ5MJ68 293 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 RASIP1Q5U651 963 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 SPOPLQ6IQ16 392 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 TTC27Q6P3X3 843 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 CCDC105Q8IYK2 499 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 ZDHHC14Q8IZN3 488 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 ARFGAP2Q8N6H7 521 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 APBB2Q92870 758 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 INO80BQ9C086 356 aaPredicted RBP16.46■□□□□ 0.23
CCDC40-202ENST00000374876 AVENQ9NQS1 362 aaPredicted RBP16.46■□□□□ 0.23
CCDC40-202ENST00000374876 BCCIPQ9P287 314 aaKnown RBP eCLIP16.46■□□□□ 0.23
CCDC40-202ENST00000374876 TRIOBPQ9H2D6 2365 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 A0A0B4J269 797 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 MYO1FO00160 1098 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 VNN1O95497 513 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 HPDP32754 393 aaPredicted RBP16.46■□□□□ 0.23
CCDC40-202ENST00000374876 WDR5P61964 334 aaKnown RBP16.46■□□□□ 0.23
CCDC40-202ENST00000374876 IFFO1Q0D2I5 559 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 CUL2Q13617 745 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 CYP1B1Q16678 543 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 CATSPER4Q7RTX7 472 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 LINC01599Q8WXQ3 324 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 RABEP2Q9H5N1 569 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 TMEM134Q9H6X4 195 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 PARP2Q9UGN5 583 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 SLC4A7Q9Y6M7 1214 aa16.46■□□□□ 0.23
CCDC40-202ENST00000374876 TCRBV7S2A1N4TA0A589 114 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 BAIAP3O94812 1187 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 RRM1P23921 792 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 COILP38432 576 aaPredicted RBP16.45■□□□□ 0.22
CCDC40-202ENST00000374876 CCT5P48643 541 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 EIF3BP55884 814 aaKnown RBP16.45■□□□□ 0.22
CCDC40-202ENST00000374876 GUCY1A3Q02108 690 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 MBTD1Q05BQ5 628 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 POU5F1BQ06416 359 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 ZBTB41Q5SVQ8 909 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 FAM117BQ6P1L5 589 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 CGRRF1Q99675 332 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 ADAM2Q99965 735 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 TXLNGYQ9BZA5 131 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 LCMT1Q9UIC8 334 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 PCDHB4Q9Y5E5 795 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 TULP2O00295 520 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 RARAP10276 462 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 HARSP12081 509 aaKnown RBP16.45■□□□□ 0.22
CCDC40-202ENST00000374876 SLC1A1P43005 524 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 CENPCQ03188 943 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 KRT71Q3SY84 523 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 ODF2Q5BJF6 829 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 AGBL2Q5U5Z8 902 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 TMEM270Q6UE05 265 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 ZDHHC24Q6UX98 284 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 FBXO25Q8TCJ0 367 aa16.45■□□□□ 0.22
CCDC40-202ENST00000374876 MTIF3Q9H2K0 278 aaKnown RBP16.45■□□□□ 0.22
CCDC40-202ENST00000374876 MTRF1LQ9UGC7 380 aaKnown RBP16.45■□□□□ 0.22
CCDC40-202ENST00000374876 EBAG9O00559 213 aa16.44■□□□□ 0.22
CCDC40-202ENST00000374876 CLDN3O15551 220 aa16.44■□□□□ 0.22
CCDC40-202ENST00000374876 UPP2O95045 317 aa16.44■□□□□ 0.22
CCDC40-202ENST00000374876 CYP1A1P04798 512 aaPredicted RBP16.44■□□□□ 0.22
CCDC40-202ENST00000374876 ACO1P21399 889 aaKnown RBP16.44■□□□□ 0.22
CCDC40-202ENST00000374876 TBXAS1P24557 533 aaPredicted RBP16.44■□□□□ 0.22
CCDC40-202ENST00000374876 LSP1P33241 339 aa16.44■□□□□ 0.22
CCDC40-202ENST00000374876 MDH1P40925 334 aaKnown RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms