RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 GPX6P59796 221 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 TFDP3Q5H9I0 405 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 MDH1BQ5I0G3 518 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 C15orf39Q6ZRI6 1047 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 NIM1KQ8IY84 436 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 JOSD2Q8TAC2 188 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 GRAMD1AQ96CP6 724 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 PSMC3IPQ9P2W1 217 aaPredicted RBP12.76□□□□□ -0.37
CLIP3-201ENST00000360535 EDF1O60869 148 aaKnown RBP12.76□□□□□ -0.37
CLIP3-201ENST00000360535 ZC3H11AO75152 810 aaKnown RBP eCLIP12.76□□□□□ -0.37
CLIP3-201ENST00000360535 STAM2O75886 525 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 GCKP35557 465 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 VCPP55072 806 aaKnown RBP12.76□□□□□ -0.37
CLIP3-201ENST00000360535 YWHAGP61981 247 aaKnown RBP eCLIP12.76□□□□□ -0.37
CLIP3-201ENST00000360535 CXCL9Q07325 125 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 CDO1Q16878 200 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 FAXCQ5TGI0 409 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 FYB2Q5VWT5 728 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 CCDC33Q8N5R6 958 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 FAM13CQ8NE31 585 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 NSUN6Q8TEA1 469 aaKnown RBP12.76□□□□□ -0.37
CLIP3-201ENST00000360535 TFAP2BQ92481 460 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 ZBTB10Q96DT7 871 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 PAFAH2Q99487 392 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 TRIM6Q9C030 488 aaPredicted RBP12.76□□□□□ -0.37
CLIP3-201ENST00000360535 METTL5Q9NRN9 209 aaKnown RBP12.76□□□□□ -0.37
CLIP3-201ENST00000360535 CISHQ9NSE2 258 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 IKBKGQ9Y6K9 419 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 CLGNO14967 610 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 CSDE1O75534 798 aaKnown RBP12.75□□□□□ -0.37
CLIP3-201ENST00000360535 MMP8P22894 467 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 PTP4A2Q12974 167 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 CCDC6Q16204 474 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 NBPF12Q5TAG4 269 aaPredicted RBP12.75□□□□□ -0.37
CLIP3-201ENST00000360535 APBB1IPQ7Z5R6 666 aaPredicted RBP12.75□□□□□ -0.37
CLIP3-201ENST00000360535 TMEM35BQ8NCS4 154 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 DTX3LQ8TDB6 740 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 ZNF302Q9NR11 478 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 hCG_1818297A0A087WSY0 165 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 F5H423 210 aaPredicted RBP12.75□□□□□ -0.37
CLIP3-201ENST00000360535 AVILO75366 819 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 TCEA3O75764 348 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 GRAP2O75791 330 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 CHRM1P11229 460 aaPredicted RBP12.75□□□□□ -0.37
CLIP3-201ENST00000360535 GM2AP17900 193 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 CNTN2Q02246 1040 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 CRYMQ14894 314 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 PDK4Q16654 411 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 RNASEH2BQ5TBB1 312 aaKnown RBP12.75□□□□□ -0.37
CLIP3-201ENST00000360535 NPNTQ6UXI9 565 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 TRIM72Q6ZMU5 477 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.75□□□□□ -0.37
CLIP3-201ENST00000360535 PHF13Q86YI8 300 aaPredicted RBP12.75□□□□□ -0.37
CLIP3-201ENST00000360535 UNC45BQ8IWX7 931 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 LRRC71Q8N4P6 559 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 TTLL6Q8N841 843 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 KCTD6Q8NC69 237 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 LPAR1Q92633 364 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 TTC25Q96NG3 672 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 FBXO6Q9NRD1 293 aaPredicted RBP12.75□□□□□ -0.37
CLIP3-201ENST00000360535 POLIQ9UNA4 740 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 STARD13Q9Y3M8 1113 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 KIAA1217Q5T5P2 1943 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 DCTN3O75935 186 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 STBD1O95210 358 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 GEMIN4P57678 1058 aaKnown RBP12.75□□□□□ -0.37
CLIP3-201ENST00000360535 C1QBPQ07021 282 aaKnown RBP12.75□□□□□ -0.37
CLIP3-201ENST00000360535 PLEKHG4Q58EX7 1191 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 XKR3Q5GH77 459 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 RFWD3Q6PCD5 774 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 SCYL3Q8IZE3 742 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 CFAP36Q96G28 342 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 PRR11Q96HE9 360 aaPredicted RBP12.75□□□□□ -0.37
CLIP3-201ENST00000360535 GMLQ99445 158 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 YIPF3Q9GZM5 350 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 MYOZ2Q9NPC6 264 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 XPO7Q9UIA9 1087 aaKnown RBP12.75□□□□□ -0.37
CLIP3-201ENST00000360535 GJA3Q9Y6H8 435 aa12.75□□□□□ -0.37
CLIP3-201ENST00000360535 CCDC195A0A1B0GUA6 201 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 GJB1P08034 283 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 KITP10721 976 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 KRT3P12035 628 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 ATP4AP20648 1035 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 IL1R2P27930 398 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 PSMC1P62191 440 aaKnown RBP12.74□□□□□ -0.37
CLIP3-201ENST00000360535 DENND1BQ6P3S1 775 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 CEP120Q8N960 986 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 DENND1AQ8TEH3 1009 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 FAM111AQ96PZ2 611 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 C17orf75Q9HAS0 396 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 HEY2Q9UBP5 337 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 NUMBLQ9Y6R0 609 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 CLUHO75153 1309 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 LOXHD1Q8IVV2 1947 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 FAM155BO75949 473 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 MT-ND3P03897 115 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 T-ENOLP0DO92 83 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 TROVE2P10155 538 aaKnown RBP eCLIP12.74□□□□□ -0.37
CLIP3-201ENST00000360535 CDKN2BP42772 138 aa12.74□□□□□ -0.37
CLIP3-201ENST00000360535 ARL4CP56559 192 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms