RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 GPRC5AQ8NFJ5 357 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 ZNF473Q8WTR7 871 aaKnown RBP6.73□□□□□ -1.33
UPF2-201ENST00000356352 TMEM143Q96AN5 459 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 TUBGCP3Q96CW5 907 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 SH3GL3Q99963 347 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 MXRA8Q9BRK3 442 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 UBE2OQ9C0C9 1292 aaKnown RBP6.73□□□□□ -1.33
UPF2-201ENST00000356352 CPVLQ9H3G5 476 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 DSEQ9UL01 958 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 TET3O43151 1660 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 C17orf102A2RUQ5 167 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 CYP27B1O15528 508 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 TEX33O43247 280 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 RNASEH1O60930 286 aaKnown RBP6.73□□□□□ -1.33
UPF2-201ENST00000356352 NR3C2P08235 984 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 HMBSP08397 361 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 CHRM3P20309 590 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 PSMA4P25789 261 aaKnown RBP6.73□□□□□ -1.33
UPF2-201ENST00000356352 NUP62P37198 522 aaPredicted RBP6.73□□□□□ -1.33
UPF2-201ENST00000356352 CLK1P49759 484 aaKnown RBP6.73□□□□□ -1.33
UPF2-201ENST00000356352 TRIM28Q13263 835 aaKnown RBP6.73□□□□□ -1.33
UPF2-201ENST00000356352 CDH18Q13634 790 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 C10orf120Q5SQS8 335 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 FAM182BQ5T319 152 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 RASGRP2Q7LDG7 609 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 SIRT2Q8IXJ6 389 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 IPMKQ8NFU5 416 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 NSUN4Q96CB9 384 aaKnown RBP6.73□□□□□ -1.33
UPF2-201ENST00000356352 AGBL1Q96MI9 1066 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 CDK5RAP1Q96SZ6 601 aaKnown RBP6.73□□□□□ -1.33
UPF2-201ENST00000356352 COPS7BQ9H9Q2 264 aaPredicted RBP6.73□□□□□ -1.33
UPF2-201ENST00000356352 TMEM51Q9NW97 253 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 RPS6KB2Q9UBS0 482 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 DCDC2Q9UHG0 476 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 DPP7Q9UHL4 492 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 PP2D1A8MPX8 630 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 STX7O15400 261 aaKnown RBP6.73□□□□□ -1.33
UPF2-201ENST00000356352 HLA-DRAP01903 254 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 CYP2C9P11712 490 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 JAK1P23458 1154 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 STIP1P31948 543 aaKnown RBP6.73□□□□□ -1.33
UPF2-201ENST00000356352 GUCY1A2P33402 732 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 SOX6P35712 828 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 ETFBP38117 255 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 MAGEA4P43358 317 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 CENPAP49450 140 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 FCGRTP55899 365 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 BAATQ14032 418 aaPredicted RBP6.73□□□□□ -1.33
UPF2-201ENST00000356352 NKX1-1Q15270 411 aaPredicted RBP6.73□□□□□ -1.33
UPF2-201ENST00000356352 E2F4Q16254 413 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 PKN2Q16513 984 aaKnown RBP6.73□□□□□ -1.33
UPF2-201ENST00000356352 PCSK7Q16549 785 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 PLA2G4FQ68DD2 849 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 ERAP2Q6P179 960 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 C16orf86Q6ZW13 317 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.73□□□□□ -1.33
UPF2-201ENST00000356352 UNC45BQ8IWX7 931 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 SLC25A41Q8N5S1 370 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 FEZF2Q8TBJ5 459 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 SPATA18Q8TC71 538 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 APBB2Q92870 758 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 E2F7Q96AV8 911 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 WNK4Q96J92 1243 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 FAM167BQ9BTA0 163 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 APOL5Q9BWW9 433 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 OSBPL8Q9BZF1 889 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 VCPKMTQ9H867 229 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 MANSC1Q9H8J5 431 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 ADAM30Q9UKF2 790 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 ADGRA2Q96PE1 1338 aa6.73□□□□□ -1.33
UPF2-201ENST00000356352 GPR182O15218 404 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 GLRA3O75311 464 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 ALBP02768 609 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 PRIM2P49643 509 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 ACOT2P49753 483 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 ZNF157P51786 506 aaPredicted RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 KPNA1P52294 538 aaPredicted RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 KLC1Q07866 573 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 LMBRD2Q68DH5 695 aaPredicted RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 HS6ST3Q8IZP7 471 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 SRBD1Q8N5C6 995 aaKnown RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 SLC20A1Q8WUM9 679 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 FAM151AQ8WW52 585 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 ZNF668Q96K58 619 aaPredicted RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 XPO6Q96QU8 1125 aaKnown RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 C10orf88Q9H8K7 445 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.72□□□□□ -1.33
UPF2-201ENST00000356352 SESN1Q9Y6P5 492 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 CROCC2H7BZ55 1655 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 NBPF26B4DH59 902 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 F5H5T6 163 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 POLRMTO00411 1230 aaKnown RBP6.72□□□□□ -1.33
UPF2-201ENST00000356352 ZW10O43264 779 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 USP1O94782 785 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 F9P00740 461 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 HNRNPCP07910 306 aaKnown RBP eCLIP6.72□□□□□ -1.33
UPF2-201ENST00000356352 CNTFP26441 200 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 GTF2H1P32780 548 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 OR1G1P47890 313 aa6.72□□□□□ -1.33
UPF2-201ENST00000356352 SERPINB8P50452 374 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms