RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 KCNK9Q9NPC2 374 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 SIX4Q9UIU6 781 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 SLC12A4Q9UP95 1085 aa23.32■■□□□ 1.32
UPF3A-201ENST00000351487 TCP11X1B4DZS4 312 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 HBP1O60381 514 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 KRT3P12035 628 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 PSMA2P25787 234 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 ZNF667Q5HYK9 610 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 ARHGEF18Q6ZSZ5 1173 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 DHX37Q8IY37 1157 aaKnown RBP23.31■■□□□ 1.32
UPF3A-201ENST00000351487 TRAPPC12Q8WVT3 735 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 ACSF2Q96CM8 615 aaPredicted RBP23.31■■□□□ 1.32
UPF3A-201ENST00000351487 FRMD8P1Q9BZ68 369 aaPredicted RBP23.31■■□□□ 1.32
UPF3A-201ENST00000351487 RPF1Q9H9Y2 349 aaKnown RBP23.31■■□□□ 1.32
UPF3A-201ENST00000351487 TBK1Q9UHD2 729 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 CYTH4Q9UIA0 394 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 FOXO6A8MYZ6 492 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 CXCL11O14625 94 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 LRCH4O75427 683 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 GJB1P08034 283 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 KRT7P08729 469 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 CXCL8P10145 99 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 ETS1P14921 441 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 OSTNP61366 133 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 NR1H3Q13133 447 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 TAZQ16635 292 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 TRPM8Q7Z2W7 1104 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 SRRM1Q8IYB3 904 aaKnown RBP23.31■■□□□ 1.32
UPF3A-201ENST00000351487 ANKRD42Q8N9B4 389 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 OTUD5Q96G74 571 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 TXNRD2Q9NNW7 524 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 FGFR1OP2Q9NVK5 253 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 WDR35Q9P2L0 1181 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 NXF1Q9UBU9 619 aaKnown RBP23.31■■□□□ 1.32
UPF3A-201ENST00000351487 AGTPBP1Q9UPW5 1226 aa23.31■■□□□ 1.32
UPF3A-201ENST00000351487 CD19P15391 556 aa23.3■■□□□ 1.32
UPF3A-201ENST00000351487 RAD23BP54727 409 aa23.3■■□□□ 1.32
UPF3A-201ENST00000351487 MKRN3Q13064 507 aaKnown RBP23.3■■□□□ 1.32
UPF3A-201ENST00000351487 EFCAB12Q6NXP0 572 aa23.3■■□□□ 1.32
UPF3A-201ENST00000351487 ERO1BQ86YB8 467 aa23.3■■□□□ 1.32
UPF3A-201ENST00000351487 FBXO16Q8IX29 292 aaPredicted RBP23.3■■□□□ 1.32
UPF3A-201ENST00000351487 ARFGAP1Q8N6T3 406 aa23.3■■□□□ 1.32
UPF3A-201ENST00000351487 ELP3Q9H9T3 547 aa23.3■■□□□ 1.32
UPF3A-201ENST00000351487 KLC4Q9NSK0 619 aa23.3■■□□□ 1.32
UPF3A-201ENST00000351487 SBF1O95248 1867 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 GCAP28676 217 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 RAP1GAPP47736 663 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 IREB2P48200 963 aaKnown RBP23.29■■□□□ 1.32
UPF3A-201ENST00000351487 PPP1R21Q6ZMI0 780 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 C1orf127Q8N9H9 656 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 JOSD2Q8TAC2 188 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 TMEM121Q9BTD3 319 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 PHACTR1Q9C0D0 580 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 MINDY3Q9H8M7 445 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 USP15Q9Y4E8 981 aaPredicted RBP23.29■■□□□ 1.32
UPF3A-201ENST00000351487 EXOC1LA0A1B0GW35 172 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 GOLGA8SH3BPF8 625 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 GH1P01241 217 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 CLCN3P51790 818 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 BBS12Q6ZW61 710 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 TMEM192Q8IY95 271 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 FUKQ8N0W3 1084 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 TTC13Q8NBP0 860 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 PRCCQ92733 491 aaPredicted RBP23.29■■□□□ 1.32
UPF3A-201ENST00000351487 HAUS1Q96CS2 278 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 MAGEB18Q96M61 343 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 UBN1Q9NPG3 1134 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 PRMT7Q9NVM4 692 aaPredicted RBP23.29■■□□□ 1.32
UPF3A-201ENST00000351487 NKIRAS1Q9NYS0 192 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP23.29■■□□□ 1.32
UPF3A-201ENST00000351487 RBPJLQ9UBG7 517 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 TJP2Q9UDY2 1190 aa23.29■■□□□ 1.32
UPF3A-201ENST00000351487 LOC102724159A0A0B4J2E5 919 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 RASA4BC9J798 803 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 ADM5C9JUS6 153 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 ALOX15BO15296 676 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 RASA4O43374 803 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 NFICP08651 508 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 IL1R2P27930 398 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 KCTD2Q14681 263 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 PWP2Q15269 919 aaKnown RBP23.28■■□□□ 1.32
UPF3A-201ENST00000351487 HADHQ16836 314 aaKnown RBP23.28■■□□□ 1.32
UPF3A-201ENST00000351487 FAM187BQ17R55 369 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 TMEM132AQ24JP5 1023 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 NUGGCQ68CJ6 796 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 CDR2LQ86X02 465 aaPredicted RBP23.28■■□□□ 1.32
UPF3A-201ENST00000351487 XYLT1Q86Y38 959 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 SGSM3Q96HU1 749 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 ZNF668Q96K58 619 aaPredicted RBP23.28■■□□□ 1.32
UPF3A-201ENST00000351487 CPXM1Q96SM3 734 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 MMP19Q99542 508 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 SDCBP2Q9H190 292 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 PPCSQ9HAB8 311 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 FARP1Q9Y4F1 1045 aaPredicted RBP23.28■■□□□ 1.32
UPF3A-201ENST00000351487 SGK1O00141 431 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 C22orf31O95567 290 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 KRT19P08727 400 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 IQCF3P0C7M6 154 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 STX2P32856 288 aa23.28■■□□□ 1.32
UPF3A-201ENST00000351487 PSMC1P62191 440 aaKnown RBP23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms