RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 H2AFYO75367 372 aaKnown RBP8.83□□□□□ -1
HMGB1-203ENST00000341423 TIPRLO75663 272 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 MYO1DO94832 1006 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 RPN1P04843 607 aaKnown RBP8.83□□□□□ -1
HMGB1-203ENST00000341423 HOXB2P14652 356 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 ADD1P35611 737 aaKnown RBP8.83□□□□□ -1
HMGB1-203ENST00000341423 SARSP49591 514 aaKnown RBP8.83□□□□□ -1
HMGB1-203ENST00000341423 CBX2Q14781 532 aaPredicted RBP8.83□□□□□ -1
HMGB1-203ENST00000341423 ITPRIPL1Q6GPH6 555 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 HPDLQ96IR7 371 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 SYNPO2Q9UMS6 1093 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 VPS4AQ9UN37 437 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 LUC7L2Q9Y383 392 aaKnown RBP8.83□□□□□ -1
HMGB1-203ENST00000341423 ZSCAN12O43309 604 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 CNTN5O94779 1100 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 PAK1Q13153 545 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 PSMD6Q15008 389 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 INSCQ1MX18 579 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 ATP13A4Q4VNC1 1196 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 MANEAQ5SRI9 462 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 FUT10Q6P4F1 479 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 CMTR2Q8IYT2 770 aaKnown RBP8.83□□□□□ -1
HMGB1-203ENST00000341423 CCDC110Q8TBZ0 833 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 BBS4Q96RK4 519 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 SEC62Q99442 399 aaKnown RBP8.83□□□□□ -1
HMGB1-203ENST00000341423 JADE2Q9NQC1 790 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 PHPT1Q9NRX4 125 aaPredicted RBP8.83□□□□□ -1
HMGB1-203ENST00000341423 HCN3Q9P1Z3 774 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 PIAS3Q9Y6X2 628 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 SLIT2O94813 1529 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 SDK1Q7Z5N4 2213 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 SMIM35A0A1B0GVV1 85 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 CFAP69A5D8W1 941 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 NCAM1P13591 858 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 RPL9P32969 192 aaKnown RBP8.83□□□□□ -1
HMGB1-203ENST00000341423 SCNN1AP37088 669 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 KCNJ5P48544 419 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 KLHL30Q0D2K2 578 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 PUM1Q14671 1186 aaKnown RBP eCLIP8.83□□□□□ -11e-7■■■□□ 17.8
HMGB1-203ENST00000341423 FBXO47Q5MNV8 452 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 DOK6Q6PKX4 331 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 TICAM2Q86XR7 235 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 COPS5Q92905 334 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 MCCC2Q9HCC0 563 aa8.83□□□□□ -1
HMGB1-203ENST00000341423 MTRF1LQ9UGC7 380 aaKnown RBP8.83□□□□□ -1
HMGB1-203ENST00000341423 A0A088AWK7 358 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 UBA6A0AVT1 1052 aaPredicted RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 RPP40O75818 363 aaKnown RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 APBB3O95704 486 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 ZNF10P21506 573 aaPredicted RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 KLRK1P26718 216 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 OXTRP30559 389 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 TIE1P35590 1138 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 GARSP41250 739 aaKnown RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 OC90Q02509 493 aaPredicted RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 CFAP61Q8NHU2 1237 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 HCAR2Q8TDS4 363 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 ZNF333Q96JL9 665 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 ZSWIM5Q9P217 1185 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 SLC27A6Q9Y2P4 619 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 DLX3O60479 287 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 ENDOD1O94919 500 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 AP2B1P63010 937 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 TCEAL5Q5H9L2 206 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 KCTD6Q8NC69 237 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 HDAC7Q8WUI4 952 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 FAR2Q96K12 515 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 SCYL1Q96KG9 808 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 EIF2AK1Q9BQI3 630 aaKnown RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 SRRTQ9BXP5 876 aaKnown RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 ZWILCHQ9H900 591 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 GPRC5CQ9NQ84 441 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 CYLDQ9NQC7 956 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 FAM105AQ9NUU6 356 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 DDX43Q9NXZ2 648 aaKnown RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 ARHGAP23Q9P227 1491 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 PTPRJQ12913 1337 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 AVILO75366 819 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 HNRNPA1P09651 372 aaKnown RBP eCLIP8.82□□□□□ -1
HMGB1-203ENST00000341423 COL6A1P12109 1028 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 CAMK2GQ13555 558 aaPredicted RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 SETMARQ53H47 684 aaPredicted RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 NAT16Q8N8M0 369 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 KLHL23Q8NBE8 558 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 CEP76Q8TAP6 659 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 TRIB2Q92519 343 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 NAF1Q96HR8 494 aaKnown RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 CRACR2AQ9BSW2 395 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 PI4K2AQ9BTU6 479 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 TSPY26PQ9H489 355 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 TYW1Q9NV66 732 aaKnown RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 YDJCA8MPS7 323 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 NVLO15381 856 aaKnown RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 TP53P04637 393 aaPredicted RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 CHMLP26374 656 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 HPDP32754 393 aaPredicted RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 VAMP7P51809 220 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 RBBP5Q15291 538 aaKnown RBP8.82□□□□□ -1
HMGB1-203ENST00000341423 SGSM1Q2NKQ1 1148 aa8.82□□□□□ -1
HMGB1-203ENST00000341423 NUGGCQ68CJ6 796 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms