RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 SLC1A1P43005 524 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 GABRB2P47870 512 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 AARSP49588 968 aaKnown RBP eCLIP16.37■□□□□ 0.21
LIMS1-202ENST00000338045 PEX5P50542 639 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 CLCNKBP51801 687 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 UPP1Q16831 310 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 ADGRF2Q8IZF7 708 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 PDCL2Q8N4E4 241 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 MMGT1Q8N4V1 131 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 RNF169Q8NCN4 708 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 MSANTD4Q8NCY6 345 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 ALG3Q92685 438 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 CPXM1Q96SM3 734 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 CCDC66A2RUB6 948 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 TMEM191CA6NGB0 347 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 CYB561D2O14569 222 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 GABRDO14764 452 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 CEP104O60308 925 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 NBNO60934 754 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 PROSCO94903 275 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 PFKMP08237 780 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 IGFBP6P24592 240 aaPredicted RBP16.37■□□□□ 0.21
LIMS1-202ENST00000338045 TAP1Q03518 808 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 PDCLQ13371 301 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 PPP1R26Q5T8A7 1209 aaPredicted RBP16.37■□□□□ 0.21
LIMS1-202ENST00000338045 ANKRD33Q7Z3H0 272 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 CPNE8Q86YQ8 564 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 UBL4BQ8N7F7 174 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 C3orf58Q8NDZ4 430 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 KRT35Q92764 455 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 C18orf8Q96DM3 657 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 SNX25Q9H3E2 840 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 DPEP3Q9H4B8 488 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 ANKZF1Q9H8Y5 726 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 WDR35Q9P2L0 1181 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 CACNG4Q9UBN1 327 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 LCMT1Q9UIC8 334 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 TMEM59LQ9UK28 342 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 PCDHA3Q9Y5H8 950 aa16.37■□□□□ 0.21
LIMS1-202ENST00000338045 SPOPO43791 374 aa16.36■□□□□ 0.21
LIMS1-202ENST00000338045 LMO2P25791 158 aa16.36■□□□□ 0.21
LIMS1-202ENST00000338045 MAN1A1P33908 653 aa16.36■□□□□ 0.21
LIMS1-202ENST00000338045 C2orf54Q08AI8 447 aa16.36■□□□□ 0.21
LIMS1-202ENST00000338045 GOLGA7BQ2TAP0 167 aa16.36■□□□□ 0.21
LIMS1-202ENST00000338045 PLEKHG4Q58EX7 1191 aa16.36■□□□□ 0.21
LIMS1-202ENST00000338045 DNAJC24Q6P3W2 148 aa16.36■□□□□ 0.21
LIMS1-202ENST00000338045 OSTM1Q86WC4 334 aa16.36■□□□□ 0.21
LIMS1-202ENST00000338045 DDX27Q96GQ7 796 aaKnown RBP16.36■□□□□ 0.21
LIMS1-202ENST00000338045 SENP8Q96LD8 212 aa16.36■□□□□ 0.21
LIMS1-202ENST00000338045 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.36■□□□□ 0.21
LIMS1-202ENST00000338045 DNAI2Q9GZS0 605 aa16.36■□□□□ 0.21
LIMS1-202ENST00000338045 EPC1Q9H2F5 836 aa16.36■□□□□ 0.21
LIMS1-202ENST00000338045 TJP2Q9UDY2 1190 aa16.36■□□□□ 0.21
LIMS1-202ENST00000338045 CASTOR2A6NHX0 329 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 PGRMC1O00264 195 aaKnown RBP16.35■□□□□ 0.21
LIMS1-202ENST00000338045 HCRTO43612 131 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 POMCP01189 267 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 SETSIPP0DME0 302 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 H2AFXP16104 143 aaPredicted RBP16.35■□□□□ 0.21
LIMS1-202ENST00000338045 PAX3P23760 479 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 MARCKSL1P49006 195 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 RPL7AP62424 266 aaKnown RBP16.35■□□□□ 0.21
LIMS1-202ENST00000338045 TUSC3Q13454 348 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 ZNF268Q14587 947 aaPredicted RBP16.35■□□□□ 0.21
LIMS1-202ENST00000338045 CYP4A22Q5TCH4 519 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 TTC30AQ86WT1 665 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 XYLT1Q86Y38 959 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 UBA3Q8TBC4 463 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 ZNF333Q96JL9 665 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 TNIP3Q96KP6 325 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 PAAF1Q9BRP4 392 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 IP6K2Q9UHH9 426 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 ERBB2P04626 1255 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 PDGFRBP09619 1106 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 COL6A1P12109 1028 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 WSCD1Q658N2 575 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 SLC39A5Q6ZMH5 540 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 TMEM86AQ8N2M4 240 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 DNAJC5GQ8N7S2 189 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.35■□□□□ 0.21
LIMS1-202ENST00000338045 STK32AQ8WU08 396 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 SLC35F5Q8WV83 523 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 MCRS1Q96EZ8 462 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 UROC1Q96N76 676 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 RBM12Q9NTZ6 932 aaKnown RBP16.35■□□□□ 0.21
LIMS1-202ENST00000338045 FAM49BQ9NUQ9 324 aa16.35■□□□□ 0.21
LIMS1-202ENST00000338045 SIGLEC16A6NMB1 481 aa16.34■□□□□ 0.21
LIMS1-202ENST00000338045 PQBP1O60828 265 aaKnown RBP16.34■□□□□ 0.21
LIMS1-202ENST00000338045 CAPN15O75808 1086 aa16.34■□□□□ 0.21
LIMS1-202ENST00000338045 GJB6O95452 261 aa16.34■□□□□ 0.21
LIMS1-202ENST00000338045 PSMC1P62191 440 aaKnown RBP16.34■□□□□ 0.21
LIMS1-202ENST00000338045 C1orf53Q5VUE5 145 aa16.34■□□□□ 0.21
LIMS1-202ENST00000338045 GLB1LQ6UWU2 654 aa16.34■□□□□ 0.21
LIMS1-202ENST00000338045 CD300LGQ6UXG3 332 aa16.34■□□□□ 0.21
LIMS1-202ENST00000338045 CTU1Q7Z7A3 348 aaKnown RBP16.34■□□□□ 0.21
LIMS1-202ENST00000338045 RNPC3Q96LT9 517 aaKnown RBP16.34■□□□□ 0.21
LIMS1-202ENST00000338045 TOX2Q96NM4 488 aa16.34■□□□□ 0.21
LIMS1-202ENST00000338045 MCEEQ96PE7 176 aa16.34■□□□□ 0.21
LIMS1-202ENST00000338045 PARD6BQ9BYG5 372 aa16.34■□□□□ 0.21
LIMS1-202ENST00000338045 MIS12Q9H081 205 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms