RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 PDZD8Q8NEN9 1154 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 SYTL5Q8TDW5 730 aaPredicted RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 TCP11Q8WWU5 503 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 HAS2Q92819 552 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 PSMG2Q969U7 264 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 FCRL3Q96P31 734 aaPredicted RBP1.77□□□□□ -2.13
LINC00643-201ENST00000334389 SIN3AQ96ST3 1273 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 SGPP1Q9BX95 441 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 HEMGNQ9BXL5 484 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 ST6GALNAC4Q9H4F1 302 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 TASP1Q9H6P5 420 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 CDHR5Q9HBB8 845 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 TBC1D22BQ9NU19 505 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 SLC38A7Q9NVC3 462 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 SEPT10Q9P0V9 454 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 TBC1D14Q9P2M4 693 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 NUMBLQ9Y6R0 609 aa1.77□□□□□ -2.13
LINC00643-201ENST00000334389 CXorf49A8MYA2 514 aaPredicted RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 TLX3O43711 291 aaPredicted RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 ULK1O75385 1050 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CRLF1O75462 422 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 GFPT2O94808 682 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 FKBP9O95302 570 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 VNN2O95498 520 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 DLGAP3O95886 979 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 NDUFB10O96000 172 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 LHBP01229 141 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 KLKB1P03952 638 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 TAL1P17542 331 aaPredicted RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 C5AR1P21730 350 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 SFPQP23246 707 aaKnown RBP eCLIP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 TYK2P29597 1187 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 OPRM1P35372 400 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 MATKP42679 507 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 PLK1P53350 603 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 SATB1Q01826 763 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 EFEMP1Q12805 493 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 GRSF1Q12849 480 aaKnown RBP eCLIP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 DCTN2Q13561 401 aaKnown RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 SLC12A1Q13621 1099 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 SNTB1Q13884 538 aaKnown RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CLLU1OSQ5K130 101 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 TTC19Q6DKK2 380 aaPredicted RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 XKRXQ6PP77 449 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 SLC4A10Q6U841 1118 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 DNM1P46Q6ZS02 220 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 GDF7Q7Z4P5 450 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 BTN2A2Q8WVV5 523 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 PHKBQ93100 1093 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 PNPLA2Q96AD5 504 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 BOD1Q96IK1 185 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 TCF25Q9BQ70 676 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 TMEM134Q9H6X4 195 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 PREBQ9HCU5 417 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 KCND2Q9NZV8 630 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CNTN3Q9P232 1028 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 PLEKHB1Q9UF11 243 aaPredicted RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 SMC3Q9UQE7 1217 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 PCDHB6Q9Y5E3 794 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CITO14578 2027 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 TSPAN11A1L157 253 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 KLHL33A6NCF5 533 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 FAM170BA6NMN3 283 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 M0QZ92 97 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 E2F3O00716 465 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 PPM1GO15355 546 aaPredicted RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 DDAH1O94760 285 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 ASLP04424 464 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CYP17A1P05093 508 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 C6orf222P0C671 652 aaPredicted RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 ARSAP15289 507 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CKMT2P17540 419 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CD27P26842 260 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 GRNP28799 593 aaKnown RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 MARCKSP29966 332 aaPredicted RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 KIR2DL1P43626 348 aaPredicted RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 GPR3P46089 330 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 RARSP54136 660 aaKnown RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 SORDQ00796 357 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 KRT76Q01546 638 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 GALNT2Q10471 571 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CAMK2GQ13555 558 aaPredicted RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 PGM5Q15124 567 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 TBR1Q16650 682 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 KRTAP19-4Q3LI73 84 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 NOMO2Q5JPE7 1267 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 KIAA1755Q5JYT7 1200 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 NAA16Q6N069 864 aaPredicted RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 NUDT18Q6ZVK8 323 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 C11orf96Q7Z7L8 435 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 KMT5CQ86Y97 462 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 KSR1Q8IVT5 923 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 SPICE1Q8N0Z3 855 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 GSTCDQ8NEC7 633 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 OR4C6Q8NH72 309 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 SH3RF3Q8TEJ3 882 aaPredicted RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 THAP4Q8WY91 577 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 SEPT1Q8WYJ6 367 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 NAT6Q93015 286 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CHFRQ96EP1 664 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms