RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 GCLMP48507 274 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 PSMC1P62191 440 aaKnown RBP16.93■□□□□ 0.3
CLN3-201ENST00000333496 TNNC1P63316 161 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 FKBP3Q00688 224 aaKnown RBP16.93■□□□□ 0.3
CLN3-201ENST00000333496 LRRC63Q05C16 580 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 NFE2Q16621 373 aaPredicted RBP16.93■□□□□ 0.3
CLN3-201ENST00000333496 ZNF699Q32M78 642 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 PARM1Q6UWI2 310 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 PDZD4Q76G19 769 aaPredicted RBP16.93■□□□□ 0.3
CLN3-201ENST00000333496 DNAJB7Q7Z6W7 309 aaPredicted RBP16.93■□□□□ 0.3
CLN3-201ENST00000333496 UBALD2Q8IYN6 164 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 SLC44A3Q8N4M1 653 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 PSMG2Q969U7 264 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 MCRS1Q96EZ8 462 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 LPIN3Q9BQK8 851 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 SYT15Q9BQS2 421 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 PI4K2AQ9BTU6 479 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 ZNF334Q9HCZ1 680 aaPredicted RBP16.93■□□□□ 0.3
CLN3-201ENST00000333496 ASAH2Q9NR71 780 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 NUMBLQ9Y6R0 609 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 ANAPC1Q9H1A4 1944 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 TMEM221A6NGB7 291 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 M0R296 226 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 NARSO43776 548 aaKnown RBP16.92■□□□□ 0.3
CLN3-201ENST00000333496 LRRN2O75325 713 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 MICAL2O94851 1124 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 HLA-DRAP01903 254 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 MYL4P12829 197 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 KRT13P13646 458 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 GJA1P17302 382 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 GPR15P49685 360 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 CDH8P55286 799 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 ZNF667Q5HYK9 610 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 CYP4A22Q5TCH4 519 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 NXPE3Q969Y0 559 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 DHTKD1Q96HY7 919 aaPredicted RBP16.92■□□□□ 0.3
CLN3-201ENST00000333496 TSG101Q99816 390 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 SMYD3Q9H7B4 428 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 KIAA1468Q9P260 1216 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 CDH9Q9ULB4 789 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 DUSP12Q9UNI6 340 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 ASB3Q9Y575 518 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 NUP210Q8TEM1 1887 aaPredicted RBP16.92■□□□□ 0.3
CLN3-201ENST00000333496 ZNF197O14709 1029 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 PSMA7O14818 248 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 ASS1P00966 412 aaKnown RBP16.92■□□□□ 0.3
CLN3-201ENST00000333496 EPB41P11171 864 aaKnown RBP16.92■□□□□ 0.3
CLN3-201ENST00000333496 CYP2F1P24903 491 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 GNL1P36915 607 aaPredicted RBP16.92■□□□□ 0.3
CLN3-201ENST00000333496 SGSM1Q2NKQ1 1148 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 SPOPLQ6IQ16 392 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 HFE2Q6ZVN8 426 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 LEMD2Q8NC56 503 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 OR6B3Q8NGW1 331 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 GPR152Q8TDT2 470 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 TAS1R2Q8TE23 839 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 GIPC2Q8TF65 315 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 DUSP9Q99956 384 aaKnown RBP16.92■□□□□ 0.3
CLN3-201ENST00000333496 SDCBP2Q9H190 292 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 MMRN2Q9H8L6 949 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 LMBRD1Q9NUN5 540 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 GDE1Q9NZC3 331 aa16.92■□□□□ 0.3
CLN3-201ENST00000333496 RAP1GAPP47736 663 aa16.91■□□□□ 0.3
CLN3-201ENST00000333496 STIM1Q13586 685 aa16.91■□□□□ 0.3
CLN3-201ENST00000333496 CFAP221Q4G0U5 840 aa16.91■□□□□ 0.3
CLN3-201ENST00000333496 KLHL10Q6JEL2 608 aa16.91■□□□□ 0.3
CLN3-201ENST00000333496 TTI2Q6NXR4 508 aa16.91■□□□□ 0.3
CLN3-201ENST00000333496 GAREM2Q75VX8 874 aa16.91■□□□□ 0.3
CLN3-201ENST00000333496 STKLD1Q8NE28 680 aa16.91■□□□□ 0.3
CLN3-201ENST00000333496 SHKBP1Q8TBC3 707 aa16.91■□□□□ 0.3
CLN3-201ENST00000333496 ZSWIM3Q96MP5 696 aa16.91■□□□□ 0.3
CLN3-201ENST00000333496 SNX25Q9H3E2 840 aa16.91■□□□□ 0.3
CLN3-201ENST00000333496 DPEP3Q9H4B8 488 aa16.91■□□□□ 0.3
CLN3-201ENST00000333496 TMEM8AQ9HCN3 771 aa16.91■□□□□ 0.3
CLN3-201ENST00000333496 ABCB6Q9NP58 842 aa16.91■□□□□ 0.3
CLN3-201ENST00000333496 KMT2EQ8IZD2 1858 aa16.9■□□□□ 0.3
CLN3-201ENST00000333496 A0A1W2PRU2 124 aa16.9■□□□□ 0.3
CLN3-201ENST00000333496 PPP1R2P41236 205 aa16.9■□□□□ 0.3
CLN3-201ENST00000333496 PIK3CAP42336 1068 aa16.9■□□□□ 0.3
CLN3-201ENST00000333496 TEAD2Q15562 447 aa16.9■□□□□ 0.3
CLN3-201ENST00000333496 DDR2Q16832 855 aa16.9■□□□□ 0.3
CLN3-201ENST00000333496 SDHAF4Q5VUM1 108 aa16.9■□□□□ 0.3
CLN3-201ENST00000333496 SCARA5Q6ZMJ2 495 aa16.9■□□□□ 0.3
CLN3-201ENST00000333496 BMP8AQ7Z5Y6 402 aa16.9■□□□□ 0.3
CLN3-201ENST00000333496 SPATA2LQ8IUW3 424 aaPredicted RBP16.9■□□□□ 0.3
CLN3-201ENST00000333496 NELFBQ8WX92 580 aa16.9■□□□□ 0.3
CLN3-201ENST00000333496 TAF4BQ92750 862 aa16.9■□□□□ 0.3
CLN3-201ENST00000333496 MYLPFQ96A32 169 aa16.9■□□□□ 0.3
CLN3-201ENST00000333496 PCED1BQ96HM7 432 aa16.9■□□□□ 0.3
CLN3-201ENST00000333496 FUBP3Q96I24 572 aaKnown RBP eCLIP16.9■□□□□ 0.3
CLN3-201ENST00000333496 IL21Q9HBE4 155 aa16.9■□□□□ 0.3
CLN3-201ENST00000333496 APOBEC3GQ9HC16 384 aaKnown RBP16.9■□□□□ 0.3
CLN3-201ENST00000333496 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.9■□□□□ 0.36e-9■■■■■ 134.6
CLN3-201ENST00000333496 ZNF318Q5VUA4 2279 aa16.9■□□□□ 0.3
CLN3-201ENST00000333496 SLC16A3O15427 465 aaKnown RBP16.89■□□□□ 0.29
CLN3-201ENST00000333496 PDGFBP01127 241 aaPredicted RBP16.89■□□□□ 0.29
CLN3-201ENST00000333496 HMGA1P17096 107 aaKnown RBP16.89■□□□□ 0.29
CLN3-201ENST00000333496 GTF2H1P32780 548 aa16.89■□□□□ 0.29
CLN3-201ENST00000333496 KRT39Q6A163 491 aa16.89■□□□□ 0.29
CLN3-201ENST00000333496 FOXR2Q6PJQ5 311 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms