RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CYP11B2P19099 503 aa12□□□□□ -0.49
VPS39-201ENST00000318006 SNRPFP62306 86 aaKnown RBP12□□□□□ -0.49
VPS39-201ENST00000318006 PRKCEQ02156 737 aa12□□□□□ -0.49
VPS39-201ENST00000318006 EMC2Q15006 297 aa12□□□□□ -0.49
VPS39-201ENST00000318006 OASLQ15646 514 aaKnown RBP12□□□□□ -0.49
VPS39-201ENST00000318006 CCDC103Q8IW40 242 aa12□□□□□ -0.49
VPS39-201ENST00000318006 MSL3Q8N5Y2 521 aaKnown RBP12□□□□□ -0.49
VPS39-201ENST00000318006 STK32AQ8WU08 396 aa12□□□□□ -0.49
VPS39-201ENST00000318006 ATXN7L3BQ96GX2 97 aa12□□□□□ -0.49
VPS39-201ENST00000318006 TMEM117Q9H0C3 514 aa12□□□□□ -0.49
VPS39-201ENST00000318006 KLHL11Q9NVR0 708 aa12□□□□□ -0.49
VPS39-201ENST00000318006 ZNF839A8K0R7 811 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 A8MXQ7 604 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 APRTP07741 180 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 RUNX1T1Q06455 604 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 KLHDC7AQ5VTJ3 777 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 CRELD2Q6UXH1 353 aaPredicted RBP11.99□□□□□ -0.49
VPS39-201ENST00000318006 C3orf67Q6ZVT6 689 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 MTDHQ86UE4 582 aaKnown RBP11.99□□□□□ -0.49
VPS39-201ENST00000318006 NDUFAF2Q8N183 169 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 ATXN2LQ8WWM7 1075 aaKnown RBP11.99□□□□□ -0.49
VPS39-201ENST00000318006 SENP7Q9BQF6 1050 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 TEX12Q9BXU0 123 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 BRD8Q9H0E9 1235 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 EHD4Q9H223 541 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 RAB6BQ9NRW1 208 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 ANKEF1Q9NU02 776 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 FAM153AQ9UHL3 310 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 GGA2Q9UJY4 613 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 SALL1Q9NSC2 1324 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 A0A1B0GW55 424 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 NFIBO00712 420 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 RGL2O15211 777 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 KCNN4O15554 427 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 ZNF189O75820 626 aaPredicted RBP11.99□□□□□ -0.49
VPS39-201ENST00000318006 DLGAP3O95886 979 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 DUX4L2P0CJ85 424 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 DUX4L3P0CJ86 424 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 DUX4L4P0CJ87 422 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 DUX4L5P0CJ88 424 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 DUX4L6P0CJ89 424 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 DUX4L7P0CJ90 424 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 IL1R1P14778 569 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 RPS6P62753 249 aaKnown RBP11.99□□□□□ -0.49
VPS39-201ENST00000318006 KRR1Q13601 381 aaKnown RBP11.99□□□□□ -0.49
VPS39-201ENST00000318006 SLC30A5Q8TAD4 765 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 ATG4CQ96DT6 458 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 CNDP1Q96KN2 507 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 SMARCAD1Q9H4L7 1026 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 FBXO28Q9NVF7 368 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 DUX4Q9UBX2 424 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 NAGPAQ9UK23 515 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 A0A087X0T9 212 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 F5H423 210 aaPredicted RBP11.99□□□□□ -0.49
VPS39-201ENST00000318006 ALBP02768 609 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 FAM228BP0C875 321 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 SESN2P58004 480 aaPredicted RBP11.99□□□□□ -0.49
VPS39-201ENST00000318006 SMAD1Q15797 465 aaKnown RBP11.99□□□□□ -0.49
VPS39-201ENST00000318006 AASDHQ4L235 1098 aaPredicted RBP11.99□□□□□ -0.49
VPS39-201ENST00000318006 RNF135Q8IUD6 432 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 FBXO25Q8TCJ0 367 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 ACER1Q8TDN7 264 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 ULK4Q96C45 1275 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 SCN3BQ9NY72 215 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 P4HA2O15460 535 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 ATP4AP20648 1035 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 KCNA1Q09470 495 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 MKRN4PQ13434 485 aaPredicted RBP11.99□□□□□ -0.49
VPS39-201ENST00000318006 NCOA4Q13772 614 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 DMC1Q14565 340 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 PRAMEF18Q5VWM3 479 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 NUP93Q8N1F7 819 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 SLC16A10Q8TF71 515 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 SNX19Q92543 992 aa11.99□□□□□ -0.49
VPS39-201ENST00000318006 SCAF8Q9UPN6 1271 aaKnown RBP11.99□□□□□ -0.49
VPS39-201ENST00000318006 SRRM3A6NNA2 597 aaPredicted RBP11.98□□□□□ -0.49
VPS39-201ENST00000318006 TRAPPC3O43617 180 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 ICAM1P05362 532 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 CAP2P40123 477 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 RFC5P40937 340 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 HADHAP40939 763 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 NUDT2P50583 147 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 ALDH5A1P51649 535 aaPredicted RBP11.98□□□□□ -0.49
VPS39-201ENST00000318006 PPIDQ08752 370 aaKnown RBP11.98□□□□□ -0.49
VPS39-201ENST00000318006 IYDQ6PHW0 289 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 FAM111AQ96PZ2 611 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 ZSWIM1Q9BR11 485 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 WHRNQ9P202 907 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 TAGLN3Q9UI15 199 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 MCM8Q9UJA3 840 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 KCNA2P16389 499 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 MLH1P40692 756 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 NPEPPSP55786 919 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 TSPY1Q01534 308 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 ROR2Q01974 943 aaKnown RBP11.98□□□□□ -0.49
VPS39-201ENST00000318006 EFHC1Q5JVL4 640 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 CDKAL1Q5VV42 579 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 IFNEQ86WN2 208 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 RDM1Q8NG50 284 aa11.98□□□□□ -0.49
VPS39-201ENST00000318006 ZNF560Q96MR9 790 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms