RNA–Protein interactions for RNA: ENST00000307859.4

TRIM40-205, Transcript of tripartite motif containing 40, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRIM40, Length 1,640 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-205ENST00000307859 ZNF560Q96MR9 790 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 NT5C1AQ9BXI3 368 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 AP1M1Q9BXS5 423 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 FUT8Q9BYC5 575 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 ERVK-5Q9HDB9 667 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 FAM105AQ9NUU6 356 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 GDAP2Q9NXN4 497 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 STRIP2Q9ULQ0 834 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 L1RE1Q9UN81 338 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 SNX9Q9Y5X1 595 aa12.59□□□□□ -0.39
TRIM40-205ENST00000307859 DNAH12Q6ZR08 3092 aa12.58□□□□□ -0.39
TRIM40-205ENST00000307859 TTC28Q96AY4 2481 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 TMEM191CA6NGB0 347 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 PTGESO14684 152 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 GPR182O15218 404 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 ITGA4P13612 1032 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 LRPAP1P30533 357 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 HOXD11P31277 338 aaPredicted RBP12.58□□□□□ -0.4
TRIM40-205ENST00000307859 ACLYP53396 1101 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 RWDD2BP57060 319 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 SLC7A5Q01650 507 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 SOX4Q06945 474 aaPredicted RBP12.58□□□□□ -0.4
TRIM40-205ENST00000307859 PTK7Q13308 1070 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 ITGA7Q13683 1181 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 STILQ15468 1287 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 PPP2R5EQ16537 467 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 TRIM71Q2Q1W2 868 aaKnown RBP12.58□□□□□ -0.4
TRIM40-205ENST00000307859 MAP9Q49MG5 647 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 SGO2Q562F6 1265 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 FAM26DQ5JW98 314 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 FBXO47Q5MNV8 452 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 SEL1L2Q5TEA6 688 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 LIMS2Q7Z4I7 341 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 UNC93AQ86WB7 457 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 MAFAQ8NHW3 353 aaPredicted RBP12.58□□□□□ -0.4
TRIM40-205ENST00000307859 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.58□□□□□ -0.4
TRIM40-205ENST00000307859 DIS3LQ8TF46 1054 aaKnown RBP12.58□□□□□ -0.4
TRIM40-205ENST00000307859 MRPL45Q9BRJ2 306 aaKnown RBP12.58□□□□□ -0.4
TRIM40-205ENST00000307859 SLITRK6Q9H5Y7 841 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 GDF3Q9NR23 364 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 IP6K2Q9UHH9 426 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 CYTH4Q9UIA0 394 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 NME7Q9Y5B8 376 aa12.58□□□□□ -0.4
TRIM40-205ENST00000307859 UNC80Q8N2C7 3258 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 MOXD2PA6NHM9 499 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 BHMG1C9JSJ3 638 aaPredicted RBP12.57□□□□□ -0.4
TRIM40-205ENST00000307859 TNFRSF10AO00220 468 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 MAP2K7O14733 419 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 RAD51CO43502 376 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 PSTPIP1O43586 416 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 ZMYND10O75800 440 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 SASH3O75995 380 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 MYCNP04198 464 aaPredicted RBP12.57□□□□□ -0.4
TRIM40-205ENST00000307859 PYGMP11217 842 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 SYN1P17600 705 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 THPOP40225 353 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 GABRB2P47870 512 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 ZNF697Q5TEC3 545 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 AADACL2Q6P093 401 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 DNAJC24Q6P3W2 148 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 LCLAT1Q6UWP7 414 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 KLHL7Q8IXQ5 586 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 HACE1Q8IYU2 909 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 HEXIM2Q96MH2 286 aaKnown RBP12.57□□□□□ -0.4
TRIM40-205ENST00000307859 PPP1R10Q96QC0 940 aaKnown RBP12.57□□□□□ -0.4
TRIM40-205ENST00000307859 TSEN34Q9BSV6 310 aaKnown RBP12.57□□□□□ -0.4
TRIM40-205ENST00000307859 TRAIPQ9BWF2 469 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 AGO3Q9H9G7 860 aaKnown RBP12.57□□□□□ -0.4
TRIM40-205ENST00000307859 WDR35Q9P2L0 1181 aa12.57□□□□□ -0.4
TRIM40-205ENST00000307859 GOLGA6L10A0A0M3HER8 536 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 M0QYV0 167 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 SART1O43290 800 aaKnown RBP12.56□□□□□ -0.4
TRIM40-205ENST00000307859 CAND2O75155 1236 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 HEXIM1O94992 359 aaKnown RBP12.56□□□□□ -0.4
TRIM40-205ENST00000307859 GJB6O95452 261 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 GLI1P08151 1106 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 MYBL2P10244 700 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 GPD2P43304 727 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 TAF6P49848 677 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 RPL7AP62424 266 aaKnown RBP12.56□□□□□ -0.4
TRIM40-205ENST00000307859 MRPS25P82663 173 aaKnown RBP12.56□□□□□ -0.4
TRIM40-205ENST00000307859 ZNF252P-AS1Q0IIN9 211 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 NFX1Q12986 1120 aaKnown RBP12.56□□□□□ -0.4
TRIM40-205ENST00000307859 SOWAHAQ2M3V2 549 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 SV2CQ496J9 727 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 CYP4A22Q5TCH4 519 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 MRPL10Q7Z7H8 261 aaKnown RBP12.56□□□□□ -0.4
TRIM40-205ENST00000307859 SLC13A5Q86YT5 568 aaPredicted RBP12.56□□□□□ -0.4
TRIM40-205ENST00000307859 NIPA2Q8N8Q9 360 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 AENQ8WTP8 325 aaKnown RBP12.56□□□□□ -0.4
TRIM40-205ENST00000307859 DDX27Q96GQ7 796 aaKnown RBP12.56□□□□□ -0.4
TRIM40-205ENST00000307859 CPXM1Q96SM3 734 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 PLVAPQ9BX97 442 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 DDX47Q9H0S4 455 aaKnown RBP12.56□□□□□ -0.4
TRIM40-205ENST00000307859 RNF19AQ9NV58 838 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 OGFRQ9NZT2 677 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 NR2E1Q9Y466 385 aa12.56□□□□□ -0.4
TRIM40-205ENST00000307859 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.56□□□□□ -0.4
TRIM40-205ENST00000307859 KPNA7A9QM74 516 aa12.55□□□□□ -0.4
TRIM40-205ENST00000307859 SPTLC1O15269 473 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms