RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ABI2Q9NYB9 513 aaPredicted RBP15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 AGO2Q9UKV8 859 aaKnown RBP15.94■□□□□ 0.14
CCDC88B-201ENST00000301897 LAMA1P25391 3075 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 KPNA7A9QM74 516 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 H3BQV1 296 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 TM4SF5O14894 197 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 IL18RAPO95256 599 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 F11P03951 625 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 PMLP29590 882 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 ACOT2P49753 483 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 KARSQ15046 597 aaKnown RBP15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 ELF2Q15723 593 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 PLA2G2CQ5R387 149 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 STPG1Q5TH74 334 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 WSCD1Q658N2 575 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 FSTL4Q6MZW2 842 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 SLC39A4Q6P5W5 647 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 KBTBD6Q86V97 674 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 MON1AQ86VX9 555 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 CPA6Q8N4T0 437 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 RASSF8Q8NHQ8 419 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 LEO1Q8WVC0 666 aaPredicted RBP15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 USP13Q92995 863 aaPredicted RBP15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 SMG9Q9H0W8 520 aaKnown RBP15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 ST6GALNAC4Q9H4F1 302 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 ZHX3Q9H4I2 956 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 EBF3Q9H4W6 596 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 ABCB6Q9NP58 842 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 HPS4Q9NQG7 708 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 STYXL1Q9Y6J8 313 aa15.93■□□□□ 0.14
CCDC88B-201ENST00000301897 RNF40O75150 1001 aa15.92■□□□□ 0.14
CCDC88B-201ENST00000301897 RHOBTB1O94844 696 aa15.92■□□□□ 0.14
CCDC88B-201ENST00000301897 HMGA1P17096 107 aaKnown RBP15.92■□□□□ 0.14
CCDC88B-201ENST00000301897 LONP1P36776 959 aaKnown RBP15.92■□□□□ 0.14
CCDC88B-201ENST00000301897 MPLP40238 635 aa15.92■□□□□ 0.14
CCDC88B-201ENST00000301897 RPL10AP62906 217 aaKnown RBP15.92■□□□□ 0.14
CCDC88B-201ENST00000301897 DHX8Q14562 1220 aaKnown RBP15.92■□□□□ 0.14
CCDC88B-201ENST00000301897 TMEM150AQ86TG1 271 aa15.92■□□□□ 0.14
CCDC88B-201ENST00000301897 LRRTM3Q86VH5 581 aa15.92■□□□□ 0.14
CCDC88B-201ENST00000301897 RAD54LQ92698 747 aa15.92■□□□□ 0.14
CCDC88B-201ENST00000301897 ACDQ96AP0 544 aa15.92■□□□□ 0.14
CCDC88B-201ENST00000301897 HVCN1Q96D96 273 aa15.92■□□□□ 0.14
CCDC88B-201ENST00000301897 P2RY13Q9BPV8 354 aa15.92■□□□□ 0.14
CCDC88B-201ENST00000301897 TMEM206Q9H813 350 aa15.92■□□□□ 0.14
CCDC88B-201ENST00000301897 EML5Q05BV3 1969 aa15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 OBSL1O75147 1896 aa15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 PRPF40AO75400 957 aaKnown RBP15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 PXNP49023 591 aaPredicted RBP15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 NR1H3Q13133 447 aa15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 MCM6Q14566 821 aa15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 N4BP2L1Q5TBK1 243 aaPredicted RBP15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 PKN3Q6P5Z2 889 aa15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 SYT13Q7L8C5 426 aa15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 C11orf74Q86VG3 221 aa15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 TMEM86AQ8N2M4 240 aa15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 KRI1Q8N9T8 703 aaKnown RBP15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 SPATA18Q8TC71 538 aa15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 POMGNT1Q8WZA1 660 aa15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 LARP4BQ92615 738 aaKnown RBP15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 ATP2A3Q93084 1043 aa15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 TRMT2BQ96GJ1 504 aaKnown RBP15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 FIZ1Q96SL8 496 aa15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 ACBD6Q9BR61 282 aa15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 LSM14BQ9BX40 385 aaKnown RBP15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 BLOC1S4Q9NUP1 217 aa15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 EBF1Q9UH73 591 aa15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 CCL26Q9Y258 94 aa15.91■□□□□ 0.14
CCDC88B-201ENST00000301897 ZFHX4Q86UP3 3567 aa15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 OTOL1A6NHN0 477 aaPredicted RBP15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 ANKRD63C9JTQ0 380 aa15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 HUS1O60921 280 aa15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 APBB3O95704 486 aa15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 EGFP01133 1207 aa15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 PLCG1P19174 1290 aa15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 NMT1P30419 496 aaKnown RBP15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 MYL7Q01449 175 aa15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 FAM160A1Q05DH4 1040 aa15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 PLK5Q496M5 336 aa15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 TXNDC8Q6A555 127 aa15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 TRIM68Q6AZZ1 485 aa15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 CACTINQ8WUQ7 758 aaKnown RBP15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 SEL1LQ9UBV2 794 aa15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 MAGED2Q9UNF1 606 aaPredicted RBP15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 EXOC7Q9UPT5 735 aa15.9■□□□□ 0.14
CCDC88B-201ENST00000301897 TRAV19A0A0A6YYK7 116 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 USP17L7P0C7H9 530 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 ARSAP15289 507 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 GJA4P35212 333 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 IFNAR2P48551 515 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 PDE6CP51160 858 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 GALK1P51570 392 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 MTF1Q14872 753 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 RABEP1Q15276 862 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 CCDC6Q16204 474 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 RNF43Q68DV7 783 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 FSIP1Q8NA03 581 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 OSCP1Q8WVF1 389 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 CD101Q93033 1021 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 CHFRQ96EP1 664 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 MYRFLQ96LU7 910 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms