RNA–Protein interactions for RNA: ENST00000300862.7

HIF3A-204, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene HIF3A, Length 2,551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-204ENST00000300862 PPP1R16BQ96T49 567 aa13.6□□□□□ -0.23
HIF3A-204ENST00000300862 CCDC77Q9BR77 488 aa13.6□□□□□ -0.23
HIF3A-204ENST00000300862 VPS37BQ9H9H4 285 aa13.6□□□□□ -0.23
HIF3A-204ENST00000300862 NKIRAS1Q9NYS0 192 aa13.6□□□□□ -0.23
HIF3A-204ENST00000300862 CYTH4Q9UIA0 394 aa13.6□□□□□ -0.23
HIF3A-204ENST00000300862 PNMA3Q9UL41 463 aa13.6□□□□□ -0.23
HIF3A-204ENST00000300862 hCG_1818297A0A087WSY0 165 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 TCEA3O75764 348 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 CDKN2BP42772 138 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 VGLL4Q14135 290 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 STAT4Q14765 748 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 MAPK6Q16659 721 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 PTPN20Q4JDL3 420 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 TFDP3Q5H9I0 405 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 EEF1DP3Q658K8 133 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 CGB2Q6NT52 195 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 LBX2Q6XYB7 198 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 PNMA8AQ86V59 439 aaPredicted RBP13.59□□□□□ -0.23
HIF3A-204ENST00000300862 APOBEC3FQ8IUX4 373 aaKnown RBP13.59□□□□□ -0.23
HIF3A-204ENST00000300862 ZBED8Q8IZ13 594 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 C4orf33Q8N1A6 199 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 MAML1Q92585 1016 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 LGALS13Q9UHV8 139 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 SSC5DA1L4H1 1573 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 INO80B-WBP1J3KQ70 363 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 OGTO15294 1046 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 GSTA1P08263 222 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 HOXC6P09630 235 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 PSMA2P25787 234 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 IL1R2P27930 398 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 ASPAP45381 313 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 NRLP54845 237 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 WDR4P57081 412 aaKnown RBP13.59□□□□□ -0.23
HIF3A-204ENST00000300862 PKN2Q16513 984 aaKnown RBP13.59□□□□□ -0.23
HIF3A-204ENST00000300862 SGSM1Q2NKQ1 1148 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 FAM160B1Q5W0V3 765 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 SPATA21Q7Z572 469 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 KIAA0319LQ8IZA0 1049 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 ARFGAP1Q8N6T3 406 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 CCDC63Q8NA47 563 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 RMDN2Q96LZ7 410 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 INO80BQ9C086 356 aaPredicted RBP13.59□□□□□ -0.23
HIF3A-204ENST00000300862 EURLQ9NYK6 297 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 CPSF3Q9UKF6 684 aaKnown RBP13.59□□□□□ -0.23
HIF3A-204ENST00000300862 AGTPBP1Q9UPW5 1226 aa13.59□□□□□ -0.23
HIF3A-204ENST00000300862 ABLIM1O14639 778 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 USP2O75604 605 aaPredicted RBP13.58□□□□□ -0.24
HIF3A-204ENST00000300862 SUN1O94901 812 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 CD48P09326 243 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 BAG6P46379 1132 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 VCPP55072 806 aaKnown RBP13.58□□□□□ -0.24
HIF3A-204ENST00000300862 GDF10P55107 478 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 KCNJ2P63252 427 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 LACTBP83111 547 aaPredicted RBP13.58□□□□□ -0.24
HIF3A-204ENST00000300862 OASLQ15646 514 aaKnown RBP13.58□□□□□ -0.24
HIF3A-204ENST00000300862 PPP1R15BQ5SWA1 713 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 GADL1Q6ZQY3 521 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 KIF2BQ8N4N8 673 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.58□□□□□ -0.24
HIF3A-204ENST00000300862 SLC16A10Q8TF71 515 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 COPS5Q92905 334 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 XYLT2Q9H1B5 865 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 PCSK1NQ9UHG2 260 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 ZBTB42B2RXF5 422 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 CXCL8P10145 99 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 EFNA5P52803 228 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 LMNB2Q03252 620 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 PDIA2Q13087 525 aaKnown RBP13.58□□□□□ -0.24
HIF3A-204ENST00000300862 TAF5Q15542 800 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 METTL7BQ6UX53 244 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 DPH6Q7L8W6 267 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 CFAP57Q96MR6 1250 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 EBF2Q9HAK2 575 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 HMGXB4Q9UGU5 601 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 SNCAIPQ9Y6H5 919 aa13.58□□□□□ -0.24
HIF3A-204ENST00000300862 PIK3R2O00459 728 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 LSM8O95777 96 aaKnown RBP13.57□□□□□ -0.24
HIF3A-204ENST00000300862 KRT3P12035 628 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 KRT15P19012 456 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 TAC1P20366 129 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 CLCN3P51790 818 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 MYO1EQ12965 1108 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 PIGHQ14442 188 aaPredicted RBP13.57□□□□□ -0.24
HIF3A-204ENST00000300862 EFTUD2Q15029 972 aaKnown RBP eCLIP13.57□□□□□ -0.24
HIF3A-204ENST00000300862 RNASEH2BQ5TBB1 312 aaKnown RBP13.57□□□□□ -0.24
HIF3A-204ENST00000300862 ANKRD22Q5VYY1 191 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 ARHGEF18Q6ZSZ5 1173 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 RELL1Q8IUW5 271 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 FITM2Q8N6M3 262 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 ACTL9Q8TC94 416 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 SPATC1LQ9H0A9 340 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 MINDY3Q9H8M7 445 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 TRIM33Q9UPN9 1127 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 POLR2AP24928 1970 aaKnown RBP13.57□□□□□ -0.24
HIF3A-204ENST00000300862 A0A1B0GUA9 196 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 A0A1W2PPM1 405 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 NOP56O00567 594 aaKnown RBP13.57□□□□□ -0.24
HIF3A-204ENST00000300862 CST8O60676 142 aa13.57□□□□□ -0.24
HIF3A-204ENST00000300862 GBP2P32456 591 aaPredicted RBP13.57□□□□□ -0.24
HIF3A-204ENST00000300862 PSMC1P62191 440 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms