RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 ERCC4Q92889 916 aaPredicted RBP5.07□□□□□ -1.6
CD44-202ENST00000278385 ZC3H10Q96K80 434 aaKnown RBP5.07□□□□□ -1.6
CD44-202ENST00000278385 SPATA17Q96L03 361 aa5.07□□□□□ -1.6
CD44-202ENST00000278385 TIGD1Q96MW7 591 aa5.07□□□□□ -1.6
CD44-202ENST00000278385 JAKMIP1Q96N16 626 aaKnown RBP5.07□□□□□ -1.6
CD44-202ENST00000278385 TSGA13Q96PP4 275 aa5.07□□□□□ -1.6
CD44-202ENST00000278385 LRFN3Q9BTN0 628 aa5.07□□□□□ -1.6
CD44-202ENST00000278385 DEF6Q9H4E7 631 aa5.07□□□□□ -1.6
CD44-202ENST00000278385 IPPKQ9H8X2 491 aa5.07□□□□□ -1.6
CD44-202ENST00000278385 CCM2LQ9NUG4 571 aaPredicted RBP5.07□□□□□ -1.6
CD44-202ENST00000278385 PIH1D1Q9NWS0 290 aaKnown RBP5.07□□□□□ -1.6
CD44-202ENST00000278385 ORC3Q9UBD5 711 aaPredicted RBP5.07□□□□□ -1.6
CD44-202ENST00000278385 PARP4Q9UKK3 1724 aaKnown RBP5.06□□□□□ -1.6
CD44-202ENST00000278385 NSD2O96028 1365 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 PCDH11XQ9BZA7 1347 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 PCDH11YQ9BZA8 1340 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 PI4K2BG5E9Z4 385 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 ARNTLO00327 626 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 SLC27A2O14975 620 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 SOAT2O75908 522 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 STARD3NLO95772 234 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 MT-ND3P03897 115 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 PDCP20941 246 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 CFPP27918 469 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 MC4RP32245 332 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 CD86P42081 329 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 TLE2Q04725 743 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 MOGSQ13724 837 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 KRT32Q14532 448 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 GPR19Q15760 415 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 ASIC2Q16515 512 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 FAM110CQ1W6H9 321 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 ARL13BQ3SXY8 428 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 ZACNQ401N2 412 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 METTL24Q5JXM2 366 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 KLHL10Q6JEL2 608 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 RPUSD3Q6P087 351 aaKnown RBP5.06□□□□□ -1.6
CD44-202ENST00000278385 C16orf59Q7L2K0 433 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.06□□□□□ -1.6
CD44-202ENST00000278385 MIB1Q86YT6 1006 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 TRMT2AQ8IZ69 625 aaKnown RBP5.06□□□□□ -1.6
CD44-202ENST00000278385 TSPYL6Q8N831 410 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 SSH1Q8WYL5 1049 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 ZBTB8AQ96BR9 441 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 CEP95Q96GE4 821 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 MAELQ96JY0 434 aaKnown RBP5.06□□□□□ -1.6
CD44-202ENST00000278385 C7orf26Q96N11 449 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 CLIC6Q96NY7 704 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 SLX1AQ9BQ83 275 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 GPATCH1Q9BRR8 931 aaKnown RBP5.06□□□□□ -1.6
CD44-202ENST00000278385 PI4K2AQ9BTU6 479 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 SORBS1Q9BX66 1292 aaKnown RBP5.06□□□□□ -1.6
CD44-202ENST00000278385 ARHGAP39Q9C0H5 1083 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.06□□□□□ -1.6
CD44-202ENST00000278385 DTLQ9NZJ0 730 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 TBC1D29Q9UFV1 150 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 FBXL7Q9UJT9 491 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 GTF3C4Q9UKN8 822 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 C19orf53Q9UNZ5 99 aaPredicted RBP5.06□□□□□ -1.6
CD44-202ENST00000278385 CORO2BQ9UQ03 480 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 RGPD1P0DJD0 1748 aa5.06□□□□□ -1.6
CD44-202ENST00000278385 USP54Q70EL1 1684 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 TCRBV5S2A0A599 114 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 PLOD2O00469 737 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 MPHOSPH10O00566 681 aaKnown RBP5.05□□□□□ -1.6
CD44-202ENST00000278385 CYP27B1O15528 508 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 TGM5O43548 720 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 SGPL1O95470 568 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 SLC4A1P02730 911 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 ADRB2P07550 413 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 MYF5P13349 255 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 P4HA1P13674 534 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 HNRNPLP14866 589 aaKnown RBP eCLIP5.05□□□□□ -1.6
CD44-202ENST00000278385 ATF2P15336 505 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 KRT15P19012 456 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 C5AR1P21730 350 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 HTR1BP28222 390 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 ACTN2P35609 894 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 ANP32AP39687 249 aaKnown RBP5.05□□□□□ -1.6
CD44-202ENST00000278385 MC3RP41968 323 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 SSR1P43307 286 aaKnown RBP5.05□□□□□ -1.6
CD44-202ENST00000278385 HSPA7P48741 367 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 ALDH9A1P49189 494 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 MECP2P51608 486 aaKnown RBP5.05□□□□□ -1.6
CD44-202ENST00000278385 TUSC3Q13454 348 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 CUL4AQ13619 759 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 EIF4A2Q14240 407 aaKnown RBP5.05□□□□□ -1.6
CD44-202ENST00000278385 BECN1Q14457 450 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 PFKFB4Q16877 469 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 AMOTQ4VCS5 1084 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 SETMARQ53H47 684 aaPredicted RBP5.05□□□□□ -1.6
CD44-202ENST00000278385 CREB3L3Q68CJ9 461 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 HAUS3Q68CZ6 603 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 VASNQ6EMK4 673 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 JMJD6Q6NYC1 403 aaPredicted RBP5.05□□□□□ -1.6
CD44-202ENST00000278385 CNSTQ6PJW8 725 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 ARHGAP36Q6ZRI8 547 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 USP51Q70EK9 711 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 FAM124AQ86V42 546 aa5.05□□□□□ -1.6
CD44-202ENST00000278385 NLRP14Q86W24 1093 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms