RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 STK17AQ9UEE5 414 aa11.15□□□□□ -0.62
VPS50-201ENST00000251739 FBXO2Q9UK22 296 aaPredicted RBP11.15□□□□□ -0.62
VPS50-201ENST00000251739 AGO2Q9UKV8 859 aaKnown RBP11.15□□□□□ -0.62
VPS50-201ENST00000251739 DSEQ9UL01 958 aa11.15□□□□□ -0.62
VPS50-201ENST00000251739 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.15□□□□□ -0.62
VPS50-201ENST00000251739 SLC38A8A6NNN8 435 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 KRT18P05783 430 aaKnown RBP11.14□□□□□ -0.63
VPS50-201ENST00000251739 CCNE1P24864 410 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 GABRR2P28476 465 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 CTHP32929 405 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 SOX9P48436 509 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 TAF6P49848 677 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 CCR3P51677 355 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 WNT7BP56706 349 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 SATB1Q01826 763 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 SLC39A12Q504Y0 691 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 ARHGAP29Q52LW3 1261 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 ADALQ6DHV7 355 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 SLFN12LQ6IEE8 588 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 ARMCX5Q6P1M9 558 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 TMEM150AQ86TG1 271 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 ITIH5Q86UX2 942 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 LRRTM3Q86VH5 581 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 SFR1Q86XK3 245 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 NT5DC4Q86YG4 428 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 SPEM1Q8N4L4 309 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 GPR161Q8N6U8 529 aaKnown RBP11.14□□□□□ -0.63
VPS50-201ENST00000251739 CXorf38Q8TB03 319 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 C2orf15Q8WU43 125 aaKnown RBP11.14□□□□□ -0.63
VPS50-201ENST00000251739 EPSTI1Q96J88 318 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 LPIN3Q9BQK8 851 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 C8orf33Q9H7E9 229 aaPredicted RBP11.14□□□□□ -0.63
VPS50-201ENST00000251739 PARD6AQ9NPB6 346 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 DPP3Q9NY33 737 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 SEL1LQ9UBV2 794 aa11.14□□□□□ -0.63
VPS50-201ENST00000251739 MORC2Q9Y6X9 1032 aaPredicted RBP11.14□□□□□ -0.63
VPS50-201ENST00000251739 FRMD3A2A2Y4 597 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 MYMKA6NI61 221 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 SPECC1L-ADORA2AF8WAN1 911 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 K7ESF4 209 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 IL18RAPO95256 599 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 HAPLN1P10915 354 aaPredicted RBP11.13□□□□□ -0.63
VPS50-201ENST00000251739 HMGA1P17096 107 aaKnown RBP11.13□□□□□ -0.63
VPS50-201ENST00000251739 CDC25CP30307 473 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 TUFMP49411 452 aaKnown RBP11.13□□□□□ -0.63
VPS50-201ENST00000251739 NRLP54845 237 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 KCNA1Q09470 495 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 SMARCB1Q12824 385 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 CCINQ13939 588 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 LRRC32Q14392 662 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 RSPO4Q2I0M5 234 aaPredicted RBP11.13□□□□□ -0.63
VPS50-201ENST00000251739 GPR158Q5T848 1215 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 WSCD1Q658N2 575 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 Q6ZS52 159 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 DGLUCYQ7Z3D6 616 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 RALGPS2Q86X27 583 aaPredicted RBP11.13□□□□□ -0.63
VPS50-201ENST00000251739 BRSK2Q8IWQ3 736 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 SPPL2BQ8TCT7 592 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 CHFRQ96EP1 664 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 ATXN3LQ9H3M9 355 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 ZHX3Q9H4I2 956 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 TASP1Q9H6P5 420 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 OLFML3Q9NRN5 406 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 C2orf42Q9NWW7 574 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 CLIC4Q9Y696 253 aa11.13□□□□□ -0.63
VPS50-201ENST00000251739 LAMA1P25391 3075 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 KPNA7A9QM74 516 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 CYB561D2O14569 222 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 GAP43P17677 238 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 HOXA6P31267 233 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 CXCL12P48061 93 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 CASP5P51878 434 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 CYP4F8P98187 520 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 LMNB2Q03252 620 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 DMWDQ09019 674 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 RESTQ13127 1097 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 DGKKQ5KSL6 1271 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 L1TD1Q5T7N2 865 aaKnown RBP11.12□□□□□ -0.63
VPS50-201ENST00000251739 LAIR1Q6GTX8 287 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 YAF2Q8IY57 180 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 ZSWIM2Q8NEG5 633 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 RASSF8Q8NHQ8 419 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 BPIFB1Q8TDL5 484 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 CSGALNACT1Q8TDX6 532 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 LEO1Q8WVC0 666 aaPredicted RBP11.12□□□□□ -0.63
VPS50-201ENST00000251739 ZFYVE19Q96K21 471 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 PKMYT1Q99640 499 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 SEPT5Q99719 369 aaPredicted RBP11.12□□□□□ -0.63
VPS50-201ENST00000251739 FAM83CQ9BQN1 747 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 PYM1Q9BRP8 204 aaKnown RBP11.12□□□□□ -0.63
VPS50-201ENST00000251739 SLC46A2Q9BY10 475 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 FGFBP2Q9BYJ0 223 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 RBM12Q9NTZ6 932 aaKnown RBP11.12□□□□□ -0.63
VPS50-201ENST00000251739 TMLHEQ9NVH6 421 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 GTSE1Q9NYZ3 720 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 ZMYM5Q9UJ78 669 aa11.12□□□□□ -0.63
VPS50-201ENST00000251739 SRPRBQ9Y5M8 271 aaKnown RBP11.12□□□□□ -0.63
VPS50-201ENST00000251739 A0A087X0B3 334 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 SOBPA7XYQ1 873 aa11.11□□□□□ -0.63
VPS50-201ENST00000251739 PRR5-ARHGAP8B1AHC4 643 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms