RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 RAD21L1Q9H4I0 556 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 TAF1DQ9H5J8 278 aaPredicted RBP13.32□□□□□ -0.28
USP40-201ENST00000251722 ECT2Q9H8V3 914 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 BTBD7Q9P203 1132 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 TRAF3IP3Q9Y228 551 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 TTC26A0AVF1 554 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 IFNAR2P48551 515 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 NAB2Q15742 525 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 IQSEC1Q6DN90 963 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 SIX5Q8N196 739 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 VPS11Q9H270 941 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 NR2E3Q9Y5X4 410 aa13.32□□□□□ -0.28
USP40-201ENST00000251722 MSH4O15457 936 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 ZW10O43264 779 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 MAGEA8P43361 318 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 ACOT2P49753 483 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 MORF4L2Q15014 288 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 TRMT10CQ7L0Y3 403 aaKnown RBP13.31□□□□□ -0.28
USP40-201ENST00000251722 SNX24Q9Y343 169 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 UCHL3P15374 230 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 GUCY1A2P33402 732 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 FDFT1P37268 417 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 HIF1AQ16665 826 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 IZUMO3Q5VZ72 239 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 ARMC6Q6NXE6 501 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 MYMKA6NI61 221 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 ANTXR2P58335 489 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 GOLGA7BQ2TAP0 167 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 CDC26Q8NHZ8 85 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 ZNF473Q8WTR7 871 aaKnown RBP13.31□□□□□ -0.28
USP40-201ENST00000251722 RIN2Q8WYP3 895 aaPredicted RBP13.31□□□□□ -0.28
USP40-201ENST00000251722 EZH1Q92800 747 aaPredicted RBP13.31□□□□□ -0.28
USP40-201ENST00000251722 CGRRF1Q99675 332 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 PRDM16Q9HAZ2 1276 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 STX18Q9P2W9 335 aaKnown RBP13.31□□□□□ -0.28
USP40-201ENST00000251722 SMG5Q9UPR3 1016 aaKnown RBP13.31□□□□□ -0.28
USP40-201ENST00000251722 CCDC22O60826 627 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 HERVK_113P62684 666 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 PDIA2Q13087 525 aaKnown RBP13.31□□□□□ -0.28
USP40-201ENST00000251722 KRT72Q14CN4 511 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 TMEM259Q4ZIN3 620 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 NUGGCQ68CJ6 796 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 IL31Q6EBC2 164 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 WDR49Q8IV35 697 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 TSPAN18Q96SJ8 248 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.31□□□□□ -0.28
USP40-201ENST00000251722 ADGRG1Q9Y653 693 aa13.31□□□□□ -0.28
USP40-201ENST00000251722 PDHXO00330 501 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 PHF2O75151 1096 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 ACSL3O95573 720 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 IMPDH2P12268 514 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 TROAPQ12815 778 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 OOSP2Q86WS3 158 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 PGBD3Q8N328 593 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 SHCBP1Q8NEM2 672 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 ATP8B4Q8TF62 1192 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 GTSE1Q9NYZ3 720 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 HDAC6Q9UBN7 1215 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 SLC25A13Q9UJS0 675 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 ZNF229Q9UJW7 825 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 ITGA11Q9UKX5 1188 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 MYPNQ86TC9 1320 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 PPP1R37O75864 691 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 UPP2O95045 317 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 LSM8O95777 96 aaKnown RBP13.3□□□□□ -0.28
USP40-201ENST00000251722 ZNF135P52742 658 aaPredicted RBP13.3□□□□□ -0.28
USP40-201ENST00000251722 NPEPPSP55786 919 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 THEMIS2Q5TEJ8 643 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 EXT2Q93063 718 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 PITPNM3Q9BZ71 974 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.3□□□□□ -0.28
USP40-201ENST00000251722 TRPM5Q9NZQ8 1165 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 PLAAQ9Y263 795 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.3□□□□□ -0.28
USP40-201ENST00000251722 FAM170AA1A519 330 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 NDUFS3O75489 264 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 ZNF177Q13360 481 aaPredicted RBP13.3□□□□□ -0.28
USP40-201ENST00000251722 POLD3Q15054 466 aaPredicted RBP13.3□□□□□ -0.28
USP40-201ENST00000251722 METTL16Q86W50 562 aaKnown RBP13.3□□□□□ -0.28
USP40-201ENST00000251722 CHSY1Q86X52 802 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 CROCCP3Q8IVE0 287 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 DHX40Q8IX18 779 aaKnown RBP13.3□□□□□ -0.28
USP40-201ENST00000251722 ZKSCAN4Q969J2 545 aaPredicted RBP13.3□□□□□ -0.28
USP40-201ENST00000251722 ZMYND8Q9ULU4 1186 aaPredicted RBP13.3□□□□□ -0.28
USP40-201ENST00000251722 UBA6A0AVT1 1052 aaPredicted RBP13.3□□□□□ -0.28
USP40-201ENST00000251722 SRGAP2O75044 1071 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 ASMTLO95671 621 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 VCLP18206 1134 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 PRKCQQ04759 706 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 TTLL9Q3SXZ7 439 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 TMC5Q6UXY8 1006 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 DEFB132Q7Z7B7 95 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 KCNB2Q92953 911 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 RIOX1Q9H6W3 641 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 GJB4Q9NTQ9 266 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 TBK1Q9UHD2 729 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 H0Y3Z8 333 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 TOMM70O94826 608 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 BRAFP15056 766 aa13.3□□□□□ -0.28
USP40-201ENST00000251722 TYK2P29597 1187 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms