RNA–Protein interactions for RNA: ENST00000225742.13

SMARCD2-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 1 (best) BASIC

Gene SMARCD2, Length 1,800 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-201ENST00000225742 FAM187BQ17R55 369 aa23.15■■□□□ 1.3
SMARCD2-201ENST00000225742 SPRED3Q2MJR0 410 aa23.15■■□□□ 1.3
SMARCD2-201ENST00000225742 HSDL1Q3SXM5 330 aa23.15■■□□□ 1.3
SMARCD2-201ENST00000225742 SWT1Q5T5J6 900 aaKnown RBP23.15■■□□□ 1.3
SMARCD2-201ENST00000225742 CENPUQ71F23 418 aa23.15■■□□□ 1.3
SMARCD2-201ENST00000225742 EEPD1Q7L9B9 569 aa23.15■■□□□ 1.3
SMARCD2-201ENST00000225742 MGARPQ8TDB4 240 aa23.15■■□□□ 1.3
SMARCD2-201ENST00000225742 GRAMD1AQ96CP6 724 aa23.15■■□□□ 1.3
SMARCD2-201ENST00000225742 FGD4Q96M96 766 aa23.15■■□□□ 1.3
SMARCD2-201ENST00000225742 SPATA33Q96N06 139 aa23.15■■□□□ 1.3
SMARCD2-201ENST00000225742 ASCC2Q9H1I8 757 aaPredicted RBP23.15■■□□□ 1.3
SMARCD2-201ENST00000225742 FAM124BQ9H5Z6 455 aaPredicted RBP23.15■■□□□ 1.3
SMARCD2-201ENST00000225742 CYP3A43Q9HB55 503 aa23.15■■□□□ 1.3
SMARCD2-201ENST00000225742 DNAJC25-GNG10A0A024R161 153 aa23.14■■□□□ 1.29
SMARCD2-201ENST00000225742 EXOC1LA0A1B0GW35 172 aa23.14■■□□□ 1.29
SMARCD2-201ENST00000225742 CETPP11597 493 aa23.14■■□□□ 1.29
SMARCD2-201ENST00000225742 CREB1P16220 341 aa23.14■■□□□ 1.29
SMARCD2-201ENST00000225742 SLC25A11Q02978 314 aaKnown RBP23.14■■□□□ 1.29
SMARCD2-201ENST00000225742 MBTD1Q05BQ5 628 aa23.14■■□□□ 1.29
SMARCD2-201ENST00000225742 LRRC14Q15048 493 aa23.14■■□□□ 1.29
SMARCD2-201ENST00000225742 KYAT1Q16773 422 aa23.14■■□□□ 1.29
SMARCD2-201ENST00000225742 TMEM132AQ24JP5 1023 aa23.14■■□□□ 1.29
SMARCD2-201ENST00000225742 PTPN20Q4JDL3 420 aa23.14■■□□□ 1.29
SMARCD2-201ENST00000225742 CCDC62Q6P9F0 684 aa23.14■■□□□ 1.29
SMARCD2-201ENST00000225742 SCARA5Q6ZMJ2 495 aa23.14■■□□□ 1.29
SMARCD2-201ENST00000225742 BBS12Q6ZW61 710 aa23.14■■□□□ 1.29
SMARCD2-201ENST00000225742 GBP7Q8N8V2 638 aaPredicted RBP23.14■■□□□ 1.29
SMARCD2-201ENST00000225742 ANKRD42Q8N9B4 389 aa23.14■■□□□ 1.29
SMARCD2-201ENST00000225742 INO80B-WBP1J3KQ70 363 aa23.13■■□□□ 1.29
SMARCD2-201ENST00000225742 CD19P15391 556 aa23.13■■□□□ 1.29
SMARCD2-201ENST00000225742 PECAM1P16284 738 aaPredicted RBP23.13■■□□□ 1.29
SMARCD2-201ENST00000225742 CYP4A22Q5TCH4 519 aa23.13■■□□□ 1.29
SMARCD2-201ENST00000225742 FUKQ8N0W3 1084 aa23.13■■□□□ 1.29
SMARCD2-201ENST00000225742 INO80BQ9C086 356 aaPredicted RBP23.13■■□□□ 1.29
SMARCD2-201ENST00000225742 CDT1Q9H211 546 aa23.13■■□□□ 1.29
SMARCD2-201ENST00000225742 VRTNQ9H8Y1 702 aa23.13■■□□□ 1.29
SMARCD2-201ENST00000225742 FETUBQ9UGM5 382 aa23.13■■□□□ 1.29
SMARCD2-201ENST00000225742 SLC24A2Q9UI40 661 aa23.13■■□□□ 1.29
SMARCD2-201ENST00000225742 CFAP73A6NFT4 308 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 FAM47DPA6NHR8 397 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 MCF2P10911 925 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 RFC1P35251 1148 aaPredicted RBP23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 RAD23BP54727 409 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 PSMC1P62191 440 aaKnown RBP23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 IL9RQ01113 521 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 MPP2Q14168 576 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 KCTD2Q14681 263 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 ZNF484Q5JVG2 852 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 EEF1DP3Q658K8 133 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 TXNRD3NBQ6F5E7 133 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 CYP4F22Q6NT55 531 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 PRUNE1Q86TP1 453 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 TRIM50Q86XT4 487 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 ERO1BQ86YB8 467 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 SRRM1Q8IYB3 904 aaKnown RBP23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 GLIS1Q8NBF1 620 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 FGFR1OP2Q9NVK5 253 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 NXF1Q9UBU9 619 aaKnown RBP23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 POLIQ9UNA4 740 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 AGTPBP1Q9UPW5 1226 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 ARL2BPQ9Y2Y0 163 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 RASA4BC9J798 803 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 SGK1O00141 431 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 RASA4O43374 803 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 P4HA1P13674 534 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 PHKA2P46019 1235 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 EFCAB12Q6NXP0 572 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 TRABD2AQ86V40 505 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 IFNLR1Q8IU57 520 aaPredicted RBP23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 CNKSR2Q8WXI2 1034 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 NLRP4Q96MN2 994 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 MMP19Q99542 508 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 SGIP1Q9BQI5 828 aa23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP23.12■■□□□ 1.296e-10■□□□□ 10.6
SMARCD2-201ENST00000225742 SMG5Q9UPR3 1016 aaKnown RBP23.12■■□□□ 1.29
SMARCD2-201ENST00000225742 ZSWIM8A7E2V4 1837 aa23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 GOLGA8SH3BPF8 625 aa23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 PRPF4O43172 522 aaKnown RBP eCLIP23.11■■□□□ 1.292e-6■■□□□ 13.5
SMARCD2-201ENST00000225742 ZSCAN5DPP0CG00 497 aa23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 KDELR1P24390 212 aa23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 GABRB2P47870 512 aa23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 PLCB3Q01970 1234 aa23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 TMED2Q15363 201 aa23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 WDR72Q3MJ13 1102 aa23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 NUGGCQ68CJ6 796 aa23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 CHADLQ6NUI6 762 aa23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 SPATA21Q7Z572 469 aa23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 TTC39CQ8N584 583 aa23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 PRCCQ92733 491 aaPredicted RBP23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 DCPSQ96C86 337 aaKnown RBP23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 TGS1Q96RS0 853 aaKnown RBP23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 HAUS2Q9NVX0 235 aa23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 TBK1Q9UHD2 729 aa23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 SIX4Q9UIU6 781 aa23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 FARP1Q9Y4F1 1045 aaPredicted RBP23.11■■□□□ 1.29
SMARCD2-201ENST00000225742 LRCH4O75427 683 aa23.1■■□□□ 1.29
SMARCD2-201ENST00000225742 TSHRP16473 764 aa23.1■■□□□ 1.29
SMARCD2-201ENST00000225742 MNAT1P51948 309 aa23.1■■□□□ 1.29
SMARCD2-201ENST00000225742 CYB5D1Q6P9G0 228 aa23.1■■□□□ 1.29
SMARCD2-201ENST00000225742 XYLT1Q86Y38 959 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms