RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 ZNF394Q53GI3 561 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 KCNT1Q5JUK3 1230 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 SNX30Q5VWJ9 437 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 CENPUQ71F23 418 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 NIPA1Q7RTP0 329 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 RHPN2Q8IUC4 686 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 TEX9Q8N6V9 391 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 BANPQ8N9N5 519 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 FBXO27Q8NI29 283 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 DCAKDQ8WVC6 231 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 DCLRE1BQ9H816 532 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 PARVAQ9NVD7 372 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 ARMCX1Q9P291 453 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 ANKFY1Q9P2R3 1169 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 GABBR1Q9UBS5 961 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 SLC24A2Q9UI40 661 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 CNTNAP1P78357 1384 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 WDR64B1ANS9 1081 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 E5RJQ4 531 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 ZC3H11AO75152 810 aaKnown RBP eCLIP13.04□□□□□ -0.32
NUP88-201ENST00000225696 TMEM63AO94886 807 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 EDN1P05305 212 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 MMP8P22894 467 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 RASSF2P50749 326 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 CLDN10P78369 228 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 LMNB2Q03252 620 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 MUM1Q2TAK8 710 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 CYP4A22Q5TCH4 519 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 DRICH1Q6PGQ1 229 aaPredicted RBP13.04□□□□□ -0.32
NUP88-201ENST00000225696 ADGRD1Q6QNK2 874 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 FAM160B2Q86V87 743 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 SAMD3Q8N6K7 520 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 PYROXD1Q8WU10 500 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 ZNF606Q8WXB4 792 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 SERAC1Q96JX3 654 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 ANKRD27Q96NW4 1050 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 FNBP1Q96RU3 617 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 BTBD10Q9BSF8 475 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 TMX4Q9H1E5 349 aaPredicted RBP13.04□□□□□ -0.32
NUP88-201ENST00000225696 MANSC1Q9H8J5 431 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 ANKEF1Q9NU02 776 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 SENP1Q9P0U3 644 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 DLGAP2Q9P1A6 1054 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 TJP2Q9UDY2 1190 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 ZNRF3Q9ULT6 936 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 RGPD3A6NKT7 1758 aaPredicted RBP13.04□□□□□ -0.32
NUP88-201ENST00000225696 RGPD4Q7Z3J3 1758 aa13.04□□□□□ -0.32
NUP88-201ENST00000225696 TCRBV5S1A1TA0A578 114 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 SPDYE2BA6NHP3 402 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 C3orf70A6NLC5 250 aaPredicted RBP13.03□□□□□ -0.32
NUP88-201ENST00000225696 NVLO15381 856 aaKnown RBP13.03□□□□□ -0.32
NUP88-201ENST00000225696 ZWINTO95229 277 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 MMP10P09238 476 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 CD48P09326 243 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 SPDYE6P0CI01 402 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 ACADSP16219 412 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 CPA2P48052 419 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 BPIFB4P59827 614 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 FKBP1AP62942 108 aaKnown RBP13.03□□□□□ -0.32
NUP88-201ENST00000225696 SPDYE2Q495Y8 402 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 FYB2Q5VWT5 728 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 KBTBD2Q8IY47 623 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 FBXO36Q8NEA4 188 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 SCG3Q8WXD2 468 aaKnown RBP13.03□□□□□ -0.32
NUP88-201ENST00000225696 DHRS4Q9BTZ2 278 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 TIPINQ9BVW5 301 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 SAR1AQ9NR31 198 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 SPATS2LQ9NUQ6 558 aaKnown RBP13.03□□□□□ -0.32
NUP88-201ENST00000225696 TAS2R1Q9NYW7 299 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 IP6K2Q9UHH9 426 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 SHOC2Q9UQ13 582 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 DRG1Q9Y295 367 aaKnown RBP13.03□□□□□ -0.32
NUP88-201ENST00000225696 WASF2Q9Y6W5 498 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 CAPN9O14815 690 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 EXTL3O43909 919 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 GARTP22102 1010 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 SP100P23497 879 aaPredicted RBP13.03□□□□□ -0.32
NUP88-201ENST00000225696 MXRA7P84157 204 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 OTUD4Q01804 1114 aaKnown RBP13.03□□□□□ -0.32
NUP88-201ENST00000225696 C1QBPQ07021 282 aaKnown RBP13.03□□□□□ -0.32
NUP88-201ENST00000225696 KLC1Q07866 573 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 PSMD6Q15008 389 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 HSF5Q4G112 596 aaPredicted RBP13.03□□□□□ -0.32
NUP88-201ENST00000225696 TFDP3Q5H9I0 405 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 FOXB2Q5VYV0 432 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 SWSAP1Q6NVH7 229 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 USP37Q86T82 979 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 KIAA0319LQ8IZA0 1049 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 WDTC1Q8N5D0 677 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 ARFGAP1Q8N6T3 406 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 SLC35B2Q8TB61 432 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 ACTL9Q8TC94 416 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 NKD2Q969F2 451 aaPredicted RBP13.03□□□□□ -0.32
NUP88-201ENST00000225696 RBM41Q96IZ5 413 aaKnown RBP13.03□□□□□ -0.32
NUP88-201ENST00000225696 RMDN3Q96TC7 470 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 PDCD2LQ9BRP1 358 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 TMEM120AQ9BXJ8 343 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 ZNF341Q9BYN7 854 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 PDLIM7Q9NR12 457 aa13.03□□□□□ -0.32
NUP88-201ENST00000225696 ARHGEF4Q9NR80 690 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms