RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeast

Gene RUB1, Length 234 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RUB1	YDR139C	CCW12	Q12127	133 aa		1.06	□□□□□ -2.24
RUB1	YDR139C	YEL073C	P39974	107 aa		1.05	□□□□□ -2.24
RUB1	YDR139C	PAC10	P48363	199 aa		1.05	□□□□□ -2.24
RUB1	YDR139C	PLP1	Q04004	230 aa		1.05	□□□□□ -2.24
RUB1	YDR139C	HRD1	Q08109	551 aa		1.05	□□□□□ -2.24
RUB1	YDR139C	TRM3	Q07527	1436 aa		1.05	□□□□□ -2.24
RUB1	YDR139C	YKR070W	P36151	352 aa	Known RBP	1.04	□□□□□ -2.24
RUB1	YDR139C	EGD2	P38879	174 aa	Known RBP	1.04	□□□□□ -2.24
RUB1	YDR139C	YJR015W	P47090	510 aa		1.04	□□□□□ -2.24
RUB1	YDR139C	YGL230C	P53074	147 aa		1.04	□□□□□ -2.24
RUB1	YDR139C	NQM1	P53228	333 aa	Predicted RBP	1.04	□□□□□ -2.24
RUB1	YDR139C	YML079W	Q03629	201 aa		1.04	□□□□□ -2.24
RUB1	YDR139C	YLR050C	Q12155	161 aa	Known RBP	1.04	□□□□□ -2.24
RUB1	YDR139C	RAD51	P25454	400 aa		1.03	□□□□□ -2.24
RUB1	YDR139C	SHB17	P36136	271 aa	Known RBP	1.03	□□□□□ -2.24
RUB1	YDR139C	YIP3	P53633	176 aa		1.03	□□□□□ -2.24
RUB1	YDR139C	YDL157C	Q12082	118 aa		1.03	□□□□□ -2.24
RUB1	YDR139C	FMP49	A0A023PZB3	126 aa		1.02	□□□□□ -2.25
RUB1	YDR139C	PRE1	P22141	198 aa	Known RBP	1.02	□□□□□ -2.25
RUB1	YDR139C	SRP14	P38985	146 aa		1.02	□□□□□ -2.25
RUB1	YDR139C	YGR269W	P40326	108 aa		1.02	□□□□□ -2.25
RUB1	YDR139C	AVO2	Q04749	426 aa		1.02	□□□□□ -2.25
RUB1	YDR139C	SYM1	Q06563	197 aa		1.02	□□□□□ -2.25
RUB1	YDR139C	ATG38	Q05789	226 aa	Known RBP	1.01	□□□□□ -2.25
RUB1	YDR139C	YEL028W	P39989	153 aa		1	□□□□□ -2.25
RUB1	YDR139C	YDC1	Q02896	317 aa		1	□□□□□ -2.25
RUB1	YDR139C	KEI1	Q06346	221 aa		1	□□□□□ -2.25
RUB1	YDR139C	CMD1	P06787	147 aa	Known RBP	0.99	□□□□□ -2.25
RUB1	YDR139C	SPS2	P08459	502 aa		0.99	□□□□□ -2.25
RUB1	YDR139C	RPS25B	P0C0T4	108 aa	Known RBP	0.99	□□□□□ -2.25
RUB1	YDR139C	CSH1	P38287	376 aa		0.99	□□□□□ -2.25
RUB1	YDR139C	LIP1	Q03579	150 aa		0.99	□□□□□ -2.25
RUB1	YDR139C	THI74	Q04083	370 aa		0.99	□□□□□ -2.25
RUB1	YDR139C	RPS25A	Q3E792	108 aa	Predicted RBP	0.99	□□□□□ -2.25
RUB1	YDR139C	UIP4	Q08926	304 aa		0.98	□□□□□ -2.25
RUB1	YDR139C	FCY1	Q12178	158 aa		0.98	□□□□□ -2.25
RUB1	YDR139C	KIN28	P06242	306 aa		0.97	□□□□□ -2.25
RUB1	YDR139C	PTC1	P35182	281 aa		0.97	□□□□□ -2.25
RUB1	YDR139C	RPL35A	P0CX84	120 aa	Known RBP	0.96	□□□□□ -2.26
RUB1	YDR139C	RPL35B	P0CX85	120 aa	Known RBP	0.96	□□□□□ -2.26
RUB1	YDR139C	APS3	P47064	194 aa		0.96	□□□□□ -2.26
RUB1	YDR139C	GEP7	P53171	287 aa		0.96	□□□□□ -2.26
RUB1	YDR139C	YNL140C	P53910	189 aa		0.96	□□□□□ -2.26
RUB1	YDR139C	HSK3	P69852	69 aa		0.96	□□□□□ -2.26
RUB1	YDR139C	TMA23	Q03525	211 aa		0.96	□□□□□ -2.26
RUB1	YDR139C	ATG10	Q07879	167 aa		0.96	□□□□□ -2.26
RUB1	YDR139C	INO4	P13902	151 aa		0.95	□□□□□ -2.26
RUB1	YDR139C	UBC6	P33296	250 aa	Predicted RBP	0.95	□□□□□ -2.26
RUB1	YDR139C	TMA20	P89886	181 aa	Predicted RBP	0.95	□□□□□ -2.26
RUB1	YDR139C	TAF2	P23255	1407 aa		0.95	□□□□□ -2.26
RUB1	YDR139C	SRP102	P36057	244 aa	Predicted RBP	0.94	□□□□□ -2.26
RUB1	YDR139C	YCR001W	P25347	104 aa		0.93	□□□□□ -2.26
RUB1	YDR139C	YPR114W	Q06107	315 aa		0.93	□□□□□ -2.26
RUB1	YDR139C	RIF1	P29539	1916 aa		0.93	□□□□□ -2.26
RUB1	YDR139C	YOL013W-A	P0C272	63 aa	Predicted RBP	0.92	□□□□□ -2.26
RUB1	YDR139C	SPT14	P32363	452 aa		0.92	□□□□□ -2.26
RUB1	YDR139C	YPT31	P38555	223 aa	Known RBP	0.92	□□□□□ -2.26
RUB1	YDR139C	CIN5	P40917	295 aa		0.92	□□□□□ -2.26
RUB1	YDR139C	YNR064C	P53750	290 aa		0.92	□□□□□ -2.26
RUB1	YDR139C	YDL241W	Q07738	123 aa		0.92	□□□□□ -2.26
RUB1	YDR139C	VPS51	P36116	164 aa		0.91	□□□□□ -2.26
RUB1	YDR139C	GLC8	P41818	229 aa		0.91	□□□□□ -2.26
RUB1	YDR139C	YGL101W	P53144	215 aa		0.91	□□□□□ -2.26
RUB1	YDR139C	VAM10	Q08474	114 aa		0.91	□□□□□ -2.26
RUB1	YDR139C	ATP5	P09457	212 aa		0.9	□□□□□ -2.27
RUB1	YDR139C	YDR102C	Q03864	110 aa		0.9	□□□□□ -2.27
RUB1	YDR139C	GIM5	Q04493	163 aa		0.9	□□□□□ -2.27
RUB1	YDR139C	ADE6	P38972	1358 aa	Known RBP	0.9	□□□□□ -2.27
RUB1	YDR139C	CHD1	P32657	1468 aa		0.9	□□□□□ -2.27
RUB1	YDR139C	YBR027C	P38220	110 aa		0.89	□□□□□ -2.27
RUB1	YDR139C	YEL014C	P39999	101 aa		0.89	□□□□□ -2.27
RUB1	YDR139C	YLR046C	Q12253	270 aa		0.89	□□□□□ -2.27
RUB1	YDR139C	SPA2	P23201	1466 aa	Known RBP	0.88	□□□□□ -2.27
RUB1	YDR139C	CCC1	P47818	322 aa		0.88	□□□□□ -2.27
RUB1	YDR139C	ECM31	P38122	312 aa		0.87	□□□□□ -2.27
RUB1	YDR139C	HTD2	P38790	280 aa	Known RBP	0.87	□□□□□ -2.27
RUB1	YDR139C	LSM3	P57743	89 aa	Known RBP	0.87	□□□□□ -2.27
RUB1	YDR139C	YLR053C	Q12026	108 aa		0.87	□□□□□ -2.27
RUB1	YDR139C	RDI1	Q12434	202 aa		0.87	□□□□□ -2.27
RUB1	YDR139C	CMC4	Q3E7A9	73 aa		0.87	□□□□□ -2.27
RUB1	YDR139C	SAC3	P46674	1301 aa		0.87	□□□□□ -2.27
RUB1	YDR139C	FES1	P38260	290 aa		0.86	□□□□□ -2.27
RUB1	YDR139C	YER121W	P40076	114 aa		0.86	□□□□□ -2.27
RUB1	YDR139C	ORM1	P53224	222 aa		0.86	□□□□□ -2.27
RUB1	YDR139C	YDR476C	Q03362	224 aa		0.86	□□□□□ -2.27
RUB1	YDR139C	MAK3	Q03503	176 aa		0.86	□□□□□ -2.27
RUB1	YDR139C	YHR213W-B	Q8TGK1	99 aa		0.86	□□□□□ -2.27
RUB1	YDR139C	UBI4	P0CG63	381 aa	Known RBP	0.85	□□□□□ -2.27
RUB1	YDR139C	NMA1	Q06178	401 aa	Known RBP	0.85	□□□□□ -2.27
RUB1	YDR139C	CMC2	Q3E7A4	109 aa		0.85	□□□□□ -2.27
RUB1	YDR139C	HYP2	P23301	157 aa	Known RBP	0.84	□□□□□ -2.27
RUB1	YDR139C	HSP150	P32478	413 aa		0.84	□□□□□ -2.27
RUB1	YDR139C	HHY1	P39982	102 aa		0.84	□□□□□ -2.27
RUB1	YDR139C	YGL041W-A	P0C5N3	154 aa		0.83	□□□□□ -2.28
RUB1	YDR139C	MRS4	P23500	304 aa		0.83	□□□□□ -2.28
RUB1	YDR139C	DLS1	P40366	167 aa		0.83	□□□□□ -2.28
RUB1	YDR139C	YNL122C	P53921	115 aa	Predicted RBP	0.83	□□□□□ -2.28
RUB1	YDR139C	FMN1	Q03778	218 aa		0.83	□□□□□ -2.28
RUB1	YDR139C	YOR072W	Q08486	104 aa		0.83	□□□□□ -2.28
RUB1	YDR139C	RPL30	P14120	105 aa	Known RBP	0.82	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 56 ms