RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 ZNF560Q96MR9 790 aa11.08□□□□□ -0.64
SCN1A-222ENST00000642141 LRRC3BQ96PB8 259 aa11.08□□□□□ -0.64
SCN1A-222ENST00000642141 C7orf25Q9BPX7 421 aa11.08□□□□□ -0.64
SCN1A-222ENST00000642141 BCO2Q9BYV7 579 aa11.08□□□□□ -0.64
SCN1A-222ENST00000642141 LRRC27Q9C0I9 530 aa11.08□□□□□ -0.64
SCN1A-222ENST00000642141 CUEDC2Q9H467 287 aa11.08□□□□□ -0.64
SCN1A-222ENST00000642141 SLC39A2Q9NP94 309 aa11.08□□□□□ -0.64
SCN1A-222ENST00000642141 HSPBP1Q9NZL4 362 aa11.08□□□□□ -0.64
SCN1A-222ENST00000642141 SIX4Q9UIU6 781 aa11.08□□□□□ -0.64
SCN1A-222ENST00000642141 L1RE1Q9UN81 338 aa11.08□□□□□ -0.64
SCN1A-222ENST00000642141 MAGED2Q9UNF1 606 aaPredicted RBP11.08□□□□□ -0.64
SCN1A-222ENST00000642141 ANK1P16157 1881 aa11.08□□□□□ -0.64
SCN1A-222ENST00000642141 PRR23AA6NEV1 266 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 ZNF233A6NK53 670 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 SHISA7A6NL88 538 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 ZNF263O14978 683 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 HUS1O60921 280 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 ATP2C2O75185 946 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 PRPF40AO75400 957 aaKnown RBP11.07□□□□□ -0.64
SCN1A-222ENST00000642141 TMEM191BP0C7N4 346 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 SP9P0CG40 484 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 DLATP10515 647 aaKnown RBP11.07□□□□□ -0.64
SCN1A-222ENST00000642141 PSMC3P17980 439 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 PAX3P23760 479 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 CYP2F1P24903 491 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 SOX9P48436 509 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 TUFMP49411 452 aaKnown RBP11.07□□□□□ -0.64
SCN1A-222ENST00000642141 RBP5P82980 135 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 TSPY1Q01534 308 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 POU5F1Q01860 360 aaKnown RBP11.07□□□□□ -0.64
SCN1A-222ENST00000642141 VEPH1Q14D04 833 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 DDR2Q16832 855 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 FAM26FQ5R3K3 315 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 RESP18Q5W5W9 173 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 TSSK4Q6SA08 328 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 ZNF852Q6ZMS4 543 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 EPM2AIP1Q7L775 607 aaPredicted RBP11.07□□□□□ -0.64
SCN1A-222ENST00000642141 OSTM1Q86WC4 334 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 NT5DC4Q86YG4 428 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 YAF2Q8IY57 180 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 DCP1BQ8IZD4 617 aaKnown RBP11.07□□□□□ -0.64
SCN1A-222ENST00000642141 MAML2Q8IZL2 1156 aaPredicted RBP11.07□□□□□ -0.64
SCN1A-222ENST00000642141 LEMD2Q8NC56 503 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 TTC16Q8NEE8 873 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 CXorf38Q8TB03 319 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 DDX23Q9BUQ8 820 aaKnown RBP11.07□□□□□ -0.64
SCN1A-222ENST00000642141 LTB4R2Q9NPC1 389 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 INTS13Q9NVM9 706 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 DDX43Q9NXZ2 648 aaKnown RBP11.07□□□□□ -0.64
SCN1A-222ENST00000642141 FAM13BQ9NYF5 915 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 SERTAD1Q9UHV2 236 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 GTF3C4Q9UKN8 822 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 ITGA11Q9UKX5 1188 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 R3HCC1Q9Y3T6 440 aaKnown RBP11.07□□□□□ -0.64
SCN1A-222ENST00000642141 PCDHB5Q9Y5E4 795 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 CACNA1HO95180 2353 aa11.07□□□□□ -0.64
SCN1A-222ENST00000642141 SLC38A8A6NNN8 435 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 PROB1E7EW31 1015 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 DPYSL4O14531 572 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 TGFB1I1O43294 461 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 PRAMEF12O95522 483 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 TNNC2P02585 160 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 PDGFRBP09619 1106 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 HAPLN1P10915 354 aaPredicted RBP11.06□□□□□ -0.64
SCN1A-222ENST00000642141 CCNE1P24864 410 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 LMO2P25791 158 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 PNPLA4P41247 253 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 CSTF1Q05048 431 aaKnown RBP11.06□□□□□ -0.64
SCN1A-222ENST00000642141 DUOXA2Q1HG44 320 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 SOWAHAQ2M3V2 549 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 ITIH5Q86UX2 942 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 MFSD6LQ8IWD5 586 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 ADGRF2Q8IZF7 708 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 ADSSL1Q8N142 457 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 ZNF507Q8TCN5 953 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 SCFD1Q8WVM8 642 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 IRF7Q92985 503 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 ELMO3Q96BJ8 720 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 HPDLQ96IR7 371 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 ANKRD36BP1Q96IX9 119 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 MKNK1Q9BUB5 465 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 SLC46A2Q9BY10 475 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 TRPV4Q9HBA0 871 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 AGPAT3Q9NRZ7 376 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 RCOR1Q9UKL0 485 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 CFAP45Q9UL16 551 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 ASB3Q9Y575 518 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 PIAS3Q9Y6X2 628 aa11.06□□□□□ -0.64
SCN1A-222ENST00000642141 A0A1B0GVL5 298 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 MYBPHLA2RUH7 354 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 LAMTOR5O43504 91 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 CST3P01034 146 aaPredicted RBP11.05□□□□□ -0.64
SCN1A-222ENST00000642141 TNNI1P19237 187 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 KPNA1P52294 538 aaPredicted RBP11.05□□□□□ -0.64
SCN1A-222ENST00000642141 PSMC1P62191 440 aaKnown RBP11.05□□□□□ -0.64
SCN1A-222ENST00000642141 TNK2Q07912 1038 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 MYO1EQ12965 1108 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 MTAPQ13126 283 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 FZD5Q13467 585 aa11.05□□□□□ -0.64
SCN1A-222ENST00000642141 SNRNP35Q16560 246 aaKnown RBP11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms