RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 CYP11B2P19099 503 aa17.77■□□□□ 0.44
CLN3-264ENST00000637985 MAPK8P45983 427 aa17.77■□□□□ 0.44
CLN3-264ENST00000637985 OSTNP61366 133 aa17.77■□□□□ 0.44
CLN3-264ENST00000637985 CYP4F8P98187 520 aa17.77■□□□□ 0.44
CLN3-264ENST00000637985 PPP2R5AQ15172 486 aa17.77■□□□□ 0.44
CLN3-264ENST00000637985 RABEP1Q15276 862 aa17.77■□□□□ 0.44
CLN3-264ENST00000637985 NAIF1Q69YI7 327 aaPredicted RBP17.77■□□□□ 0.44
CLN3-264ENST00000637985 RAB44Q7Z6P3 723 aaPredicted RBP17.77■□□□□ 0.44
CLN3-264ENST00000637985 ITIH5Q86UX2 942 aa17.77■□□□□ 0.44
CLN3-264ENST00000637985 RASSF3Q86WH2 238 aa17.77■□□□□ 0.44
CLN3-264ENST00000637985 ATAD1Q8NBU5 361 aa17.77■□□□□ 0.44
CLN3-264ENST00000637985 CDT1Q9H211 546 aa17.77■□□□□ 0.44
CLN3-264ENST00000637985 IL21Q9HBE4 155 aa17.77■□□□□ 0.44
CLN3-264ENST00000637985 TUFT1Q9NNX1 390 aa17.77■□□□□ 0.44
CLN3-264ENST00000637985 ASXL3Q9C0F0 2248 aa17.77■□□□□ 0.44
CLN3-264ENST00000637985 MYO16Q9Y6X6 1858 aa17.77■□□□□ 0.43
CLN3-264ENST00000637985 CITO14578 2027 aa17.77■□□□□ 0.43
CLN3-264ENST00000637985 KIAA1549LQ6ZVL6 1849 aa17.77■□□□□ 0.43
CLN3-264ENST00000637985 APC2O95996 2303 aa17.76■□□□□ 0.43
CLN3-264ENST00000637985 OR6C75A6NL08 312 aa17.76■□□□□ 0.43
CLN3-264ENST00000637985 TRAPPC10P48553 1259 aa17.76■□□□□ 0.43
CLN3-264ENST00000637985 DHPSP49366 369 aaPredicted RBP17.76■□□□□ 0.43
CLN3-264ENST00000637985 GNL2Q13823 731 aaKnown RBP17.76■□□□□ 0.43
CLN3-264ENST00000637985 PADI6Q6TGC4 694 aa17.76■□□□□ 0.43
CLN3-264ENST00000637985 TTC9BQ8N6N2 239 aa17.76■□□□□ 0.43
CLN3-264ENST00000637985 TSTD1Q8NFU3 115 aa17.76■□□□□ 0.43
CLN3-264ENST00000637985 NUSAP1Q9BXS6 441 aaKnown RBP17.76■□□□□ 0.43
CLN3-264ENST00000637985 TPSD1Q9BZJ3 242 aa17.76■□□□□ 0.43
CLN3-264ENST00000637985 CACNA2D2Q9NY47 1150 aa17.76■□□□□ 0.43
CLN3-264ENST00000637985 TIMM13Q9Y5L4 95 aaPredicted RBP17.76■□□□□ 0.43
CLN3-264ENST00000637985 MTMR11A4FU01 709 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 SOAT2O75908 522 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 OR52Z1P0C646 297 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 ARSAP15289 507 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 ENGP17813 658 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 U2AF2P26368 475 aaKnown RBP eCLIP17.75■□□□□ 0.43
CLN3-264ENST00000637985 GJA4P35212 333 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 FAM193AP78312 1265 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 ZNF174Q15697 407 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 ZNF423Q2M1K9 1284 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 TTC38Q5R3I4 469 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 CATSPER3Q86XQ3 398 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 CMTM8Q8IZV2 173 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 ERMNQ8TAM6 284 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 ADAM32Q8TC27 787 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 EXOC4Q96A65 974 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 ACAP3Q96P50 834 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 NACC1Q96RE7 527 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 ACO2Q99798 780 aaKnown RBP17.75■□□□□ 0.43
CLN3-264ENST00000637985 HSFX1Q9UBD0 423 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 ZMYM5Q9UJ78 669 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 NOL7Q9UMY1 257 aaKnown RBP17.75■□□□□ 0.43
CLN3-264ENST00000637985 CCL26Q9Y258 94 aa17.75■□□□□ 0.43
CLN3-264ENST00000637985 EIF4E1BA6NMX2 242 aaKnown RBP17.74■□□□□ 0.43
CLN3-264ENST00000637985 K7ERI5 159 aa17.74■□□□□ 0.43
CLN3-264ENST00000637985 CDC25CP30307 473 aa17.74■□□□□ 0.43
CLN3-264ENST00000637985 MYBPC2Q14324 1141 aa17.74■□□□□ 0.43
CLN3-264ENST00000637985 ZNF568Q3ZCX4 644 aa17.74■□□□□ 0.43
CLN3-264ENST00000637985 GLIS3Q8NEA6 775 aa17.74■□□□□ 0.43
CLN3-264ENST00000637985 USP13Q92995 863 aaPredicted RBP17.74■□□□□ 0.43
CLN3-264ENST00000637985 CNOT6LQ96LI5 555 aaKnown RBP17.74■□□□□ 0.43
CLN3-264ENST00000637985 UPF2Q9HAU5 1272 aaKnown RBP17.74■□□□□ 0.43
CLN3-264ENST00000637985 TMEM74BQ9NUR3 256 aa17.74■□□□□ 0.43
CLN3-264ENST00000637985 KIF3AQ9Y496 699 aa17.74■□□□□ 0.43
CLN3-264ENST00000637985 TNRC6BQ9UPQ9 1833 aaKnown RBP17.74■□□□□ 0.43
CLN3-264ENST00000637985 PTPRDP23468 1912 aa17.74■□□□□ 0.43
CLN3-264ENST00000637985 TNFRSF10BO14763 440 aa17.73■□□□□ 0.43
CLN3-264ENST00000637985 MUTP22033 750 aa17.73■□□□□ 0.43
CLN3-264ENST00000637985 RPA1P27694 616 aa17.73■□□□□ 0.43
CLN3-264ENST00000637985 ANO7Q6IWH7 933 aa17.73■□□□□ 0.43
CLN3-264ENST00000637985 SLC23A3Q6PIS1 610 aa17.73■□□□□ 0.43
CLN3-264ENST00000637985 SYT12Q8IV01 421 aa17.73■□□□□ 0.43
CLN3-264ENST00000637985 OLIG1Q8TAK6 271 aa17.73■□□□□ 0.43
CLN3-264ENST00000637985 RIN3Q8TB24 985 aa17.73■□□□□ 0.43
CLN3-264ENST00000637985 HNRNPLLQ8WVV9 542 aaKnown RBP17.73■□□□□ 0.43
CLN3-264ENST00000637985 IFT74Q96LB3 600 aa17.73■□□□□ 0.43
CLN3-264ENST00000637985 GCNAQ96QF7 691 aa17.73■□□□□ 0.43
CLN3-264ENST00000637985 LPIN3Q9BQK8 851 aa17.73■□□□□ 0.43
CLN3-264ENST00000637985 CCDC86Q9H6F5 360 aaKnown RBP17.73■□□□□ 0.43
CLN3-264ENST00000637985 TUBGCP4Q9UGJ1 667 aa17.73■□□□□ 0.43
CLN3-264ENST00000637985 MBD1Q9UIS9 605 aaPredicted RBP17.73■□□□□ 0.43
CLN3-264ENST00000637985 DENND4CQ5VZ89 1909 aa17.72■□□□□ 0.43
CLN3-264ENST00000637985 ZNF638Q14966 1978 aaKnown RBP17.72■□□□□ 0.43
CLN3-264ENST00000637985 ABLIM1O14639 778 aa17.72■□□□□ 0.43
CLN3-264ENST00000637985 MED24O75448 989 aa17.72■□□□□ 0.43
CLN3-264ENST00000637985 MCF2P10911 925 aa17.72■□□□□ 0.43
CLN3-264ENST00000637985 PROZP22891 400 aa17.72■□□□□ 0.43
CLN3-264ENST00000637985 AVPR1AP37288 418 aa17.72■□□□□ 0.43
CLN3-264ENST00000637985 AARSP49588 968 aaKnown RBP eCLIP17.72■□□□□ 0.43
CLN3-264ENST00000637985 PSMD2Q13200 908 aa17.72■□□□□ 0.43
CLN3-264ENST00000637985 PDGFRLQ15198 375 aa17.72■□□□□ 0.43
CLN3-264ENST00000637985 USP37Q86T82 979 aa17.72■□□□□ 0.43
CLN3-264ENST00000637985 MDGA1Q8NFP4 955 aa17.72■□□□□ 0.43
CLN3-264ENST00000637985 CD101Q93033 1021 aa17.72■□□□□ 0.43
CLN3-264ENST00000637985 POLD4Q9HCU8 107 aa17.72■□□□□ 0.43
CLN3-264ENST00000637985 SCUBE2Q9NQ36 999 aa17.72■□□□□ 0.43
CLN3-264ENST00000637985 TDP1Q9NUW8 608 aa17.72■□□□□ 0.43
CLN3-264ENST00000637985 PLXNB3Q9ULL4 1909 aa17.72■□□□□ 0.43
CLN3-264ENST00000637985 ATF6P18850 670 aa17.71■□□□□ 0.43
CLN3-264ENST00000637985 PTGER3P43115 390 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms