RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 ZSCAN5AQ9BUG6 496 aa6□□□□□ -1.45
SCN1A-216ENST00000637968 TRIM15Q9C019 465 aa6□□□□□ -1.45
SCN1A-216ENST00000637968 CHKBQ9Y259 395 aa6□□□□□ -1.45
SCN1A-216ENST00000637968 TRPM2O94759 1503 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 A0A087WXM4 84 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 RCCD1A6NED2 376 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 POC1B-GALNT4F8VUJ3 575 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 CES2O00748 559 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 TSPAN4O14817 238 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 SNPHO15079 494 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 MUSKO15146 869 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 GPC4O75487 556 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 MAP3K6O95382 1288 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 TTLL1O95922 423 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 SERPING1P05155 500 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 SRGNP10124 158 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 NR4A1P22736 598 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 PTPREP23469 700 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 GNL1P36915 607 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-216ENST00000637968 SLC1A4P43007 532 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 APLP1P51693 650 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 KRR1Q13601 381 aaKnown RBP5.99□□□□□ -1.45
SCN1A-216ENST00000637968 MOGQ16653 247 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 ARHGAP44Q17R89 818 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 STK32CQ86UX6 486 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 DIS3L2Q8IYB7 885 aaKnown RBP5.99□□□□□ -1.45
SCN1A-216ENST00000637968 LSMEM2Q8N112 164 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 ZCCHC7Q8N3Z6 543 aaKnown RBP5.99□□□□□ -1.45
SCN1A-216ENST00000637968 SGF29Q96ES7 293 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 PURBQ96QR8 312 aaKnown RBP5.99□□□□□ -1.45
SCN1A-216ENST00000637968 SIAEQ9HAT2 523 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 CNNM1Q9NRU3 951 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 SENP1Q9P0U3 644 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 GABBR1Q9UBS5 961 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 SLC4A4Q9Y6R1 1079 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 FAM83GA6ND36 823 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 VILLO15195 856 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 NCAM2O15394 837 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 ZBTB43O43298 467 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 TOMM70O94826 608 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 RPN1P04843 607 aaKnown RBP5.99□□□□□ -1.45
SCN1A-216ENST00000637968 IL2RBP14784 551 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 GM2AP17900 193 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 RFC4P35249 363 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 AUHQ13825 339 aaKnown RBP5.99□□□□□ -1.45
SCN1A-216ENST00000637968 BORAQ6PGQ7 559 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 PPP4R1Q8TF05 950 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 VTI1AQ96AJ9 217 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 DACH2Q96NX9 599 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 CELF4Q9BZC1 486 aaKnown RBP5.99□□□□□ -1.45
SCN1A-216ENST00000637968 CSRNP2Q9H175 543 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 ATP13A3Q9H7F0 1226 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 KCTD5Q9NXV2 234 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 PKD2L2Q9NZM6 624 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 FBXO40Q9UH90 709 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 TMEM94Q12767 1356 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 A0A088AWK7 358 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 A0A1W2PQ67 120 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 A0A1W2PQJ5 194 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 PSMD12O00232 456 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-216ENST00000637968 C2CD2LO14523 706 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 TRAFD1O14545 582 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-216ENST00000637968 PDPK1O15530 556 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 MAGEC1O60732 1142 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 OAS1P00973 400 aaKnown RBP5.99□□□□□ -1.45
SCN1A-216ENST00000637968 RRM1P23921 792 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 AQP4P55087 323 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 ECT2LQ008S8 904 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 SQLEQ14534 574 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 GEN1Q17RS7 908 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 MTERF2Q49AM1 385 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 CAVIN4Q5BKX8 364 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 NT5DC1Q5TFE4 455 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 LPCAT4Q643R3 524 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 SDE2Q6IQ49 451 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 ZNF410Q86VK4 478 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 DCP2Q8IU60 420 aaKnown RBP5.99□□□□□ -1.45
SCN1A-216ENST00000637968 SLC25A41Q8N5S1 370 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 POU5F2Q8N7G0 328 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 ATP6V0D2Q8N8Y2 350 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 CHPT1Q8WUD6 406 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 SLC7A3Q8WY07 619 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 MRRFQ96E11 262 aaKnown RBP5.99□□□□□ -1.45
SCN1A-216ENST00000637968 ZNF486Q96H40 463 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-216ENST00000637968 SETDB2Q96T68 719 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 INO80BQ9C086 356 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-216ENST00000637968 CDH19Q9H159 772 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 GDAP2Q9NXN4 497 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 STK32BQ9NY57 414 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 USP21Q9UK80 565 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 STRIP2Q9ULQ0 834 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 RAB26Q9ULW5 256 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 AP4B1Q9Y6B7 739 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 CEMIPQ8WUJ3 1361 aa5.99□□□□□ -1.45
SCN1A-216ENST00000637968 EXOC1LA0A1B0GW35 172 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 SSU72P8A0A1W2PR75 194 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 ARHGEF35A5YM69 484 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 SPOPO43791 374 aa5.98□□□□□ -1.45
SCN1A-216ENST00000637968 FOXD2O60548 495 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-216ENST00000637968 FUCA1P04066 466 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms