RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 CST3P01034 146 aaPredicted RBP19.49■□□□□ 0.71
CLN3-263ENST00000637871 CDH5P33151 784 aaPredicted RBP19.49■□□□□ 0.71
CLN3-263ENST00000637871 TFAMQ00059 246 aaKnown RBP19.49■□□□□ 0.71
CLN3-263ENST00000637871 PTPROQ16827 1216 aa19.49■□□□□ 0.71
CLN3-263ENST00000637871 ZNF699Q32M78 642 aa19.49■□□□□ 0.71
CLN3-263ENST00000637871 C1orf53Q5VUE5 145 aa19.49■□□□□ 0.71
CLN3-263ENST00000637871 SYDE1Q6ZW31 735 aaPredicted RBP19.49■□□□□ 0.71
CLN3-263ENST00000637871 THNSL1Q8IYQ7 743 aa19.49■□□□□ 0.71
CLN3-263ENST00000637871 C7orf61Q8IZ16 206 aa19.49■□□□□ 0.71
CLN3-263ENST00000637871 CPA5Q8WXQ8 436 aa19.49■□□□□ 0.71
CLN3-263ENST00000637871 KRT35Q92764 455 aa19.49■□□□□ 0.71
CLN3-263ENST00000637871 MTMR12Q9C0I1 747 aa19.49■□□□□ 0.71
CLN3-263ENST00000637871 CYP3A43Q9HB55 503 aa19.49■□□□□ 0.71
CLN3-263ENST00000637871 PRDM5Q9NQX1 630 aaPredicted RBP19.49■□□□□ 0.71
CLN3-263ENST00000637871 UMODL1Q5DID0 1318 aa19.49■□□□□ 0.71
CLN3-263ENST00000637871 PAEPP09466 180 aa19.48■□□□□ 0.71
CLN3-263ENST00000637871 GNAT1P11488 350 aa19.48■□□□□ 0.71
CLN3-263ENST00000637871 RRM1P23921 792 aa19.48■□□□□ 0.71
CLN3-263ENST00000637871 MYL6P60660 151 aa19.48■□□□□ 0.71
CLN3-263ENST00000637871 TMEM62Q0P6H9 643 aa19.48■□□□□ 0.71
CLN3-263ENST00000637871 DUPD1Q68J44 220 aa19.48■□□□□ 0.71
CLN3-263ENST00000637871 SERINC5Q86VE9 423 aa19.48■□□□□ 0.71
CLN3-263ENST00000637871 DNAJB3Q8WWF6 145 aa19.48■□□□□ 0.71
CLN3-263ENST00000637871 SLCO2A1Q92959 643 aa19.48■□□□□ 0.71
CLN3-263ENST00000637871 MAGOHBQ96A72 148 aaKnown RBP19.48■□□□□ 0.71
CLN3-263ENST00000637871 FAM212AQ96EL1 285 aa19.48■□□□□ 0.71
CLN3-263ENST00000637871 ZNF668Q96K58 619 aaPredicted RBP19.48■□□□□ 0.71
CLN3-263ENST00000637871 CISHQ9NSE2 258 aa19.48■□□□□ 0.71
CLN3-263ENST00000637871 IP6K2Q9UHH9 426 aa19.48■□□□□ 0.71
CLN3-263ENST00000637871 MROH7Q68CQ1 1323 aa19.48■□□□□ 0.71
CLN3-263ENST00000637871 DCDC2CA8MYV0 355 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 TTI1O43156 1089 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 ATMINO43313 823 aaPredicted RBP19.47■□□□□ 0.71
CLN3-263ENST00000637871 STAU1O95793 577 aaKnown RBP19.47■□□□□ 0.71
CLN3-263ENST00000637871 MMP8P22894 467 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 MRPS25P82663 173 aaKnown RBP19.47■□□□□ 0.71
CLN3-263ENST00000637871 RHOT1Q8IXI2 618 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 FAM76AQ8TAV0 307 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 GDAP1L1Q96MZ0 367 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 ADPGKQ9BRR6 497 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 LHX5Q9H2C1 402 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 LRRC19Q9H756 370 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 STRIP2Q9ULQ0 834 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 AKT3Q9Y243 479 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 ESYT3A0FGR9 886 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 TLR3O15455 904 aaKnown RBP19.47■□□□□ 0.71
CLN3-263ENST00000637871 VTNP04004 478 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 CTSHP09668 335 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 PYGMP11217 842 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 POLR2BP30876 1174 aaKnown RBP19.47■□□□□ 0.71
CLN3-263ENST00000637871 ZNF211Q13398 564 aaPredicted RBP19.47■□□□□ 0.71
CLN3-263ENST00000637871 SEZ6Q53EL9 994 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 ZNF667Q5HYK9 610 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 PRELID2Q8N945 189 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 FEZF2Q8TBJ5 459 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 PPP1R12CQ9BZL4 782 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 XYLT2Q9H1B5 865 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 C2CD2Q9Y426 696 aa19.47■□□□□ 0.71
CLN3-263ENST00000637871 GOLGA6CA6NDK9 693 aa19.46■□□□□ 0.71
CLN3-263ENST00000637871 ZSCAN5CA6NGD5 496 aaPredicted RBP19.46■□□□□ 0.71
CLN3-263ENST00000637871 CLTBP09497 229 aa19.46■□□□□ 0.71
CLN3-263ENST00000637871 GOLGA6DP0CG33 693 aa19.46■□□□□ 0.71
CLN3-263ENST00000637871 STAG3L1P0CL83 205 aa19.46■□□□□ 0.71
CLN3-263ENST00000637871 MAMLD1Q13495 774 aa19.46■□□□□ 0.71
CLN3-263ENST00000637871 AMHR2Q16671 573 aa19.46■□□□□ 0.71
CLN3-263ENST00000637871 DCAF4L1Q3SXM0 396 aa19.46■□□□□ 0.71
CLN3-263ENST00000637871 LRRC38Q5VT99 294 aa19.46■□□□□ 0.71
CLN3-263ENST00000637871 EEF1DP3Q658K8 133 aa19.46■□□□□ 0.71
CLN3-263ENST00000637871 TSEN2Q8NCE0 465 aaKnown RBP19.46■□□□□ 0.71
CLN3-263ENST00000637871 TOX2Q96NM4 488 aa19.46■□□□□ 0.71
CLN3-263ENST00000637871 HINFPQ9BQA5 517 aa19.46■□□□□ 0.71
CLN3-263ENST00000637871 BCO2Q9BYV7 579 aa19.46■□□□□ 0.71
CLN3-263ENST00000637871 FAM204AQ9H8W3 233 aa19.46■□□□□ 0.71
CLN3-263ENST00000637871 GOLGA6AQ9NYA3 693 aa19.46■□□□□ 0.71
CLN3-263ENST00000637871 A0A087WZ62 844 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 TRIM43BA6NCK2 446 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 DAPK3O43293 454 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 FAM153BP0C7A2 387 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 ECHS1P30084 290 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 THPOP40225 353 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 PTK7Q13308 1070 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 TRIM71Q2Q1W2 868 aaKnown RBP19.45■□□□□ 0.7
CLN3-263ENST00000637871 FAM153CQ494X1 144 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 CROCCP2Q86T23 111 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 JAMLQ86YT9 394 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 KIAA0319LQ8IZA0 1049 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 GRK7Q8WTQ7 553 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 DPF3Q92784 378 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 TRIM43Q96BQ3 446 aaPredicted RBP19.45■□□□□ 0.7
CLN3-263ENST00000637871 ZIM3Q96PE6 472 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 TSPAN18Q96SJ8 248 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 FDXACB1Q9BRP7 624 aaPredicted RBP19.45■□□□□ 0.7
CLN3-263ENST00000637871 HTATIP2Q9BUP3 242 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 PLEKHA5Q9HAU0 1116 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 TMEM39AQ9NV64 488 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 WDR35Q9P2L0 1181 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 FAM153AQ9UHL3 310 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 TBX21Q9UL17 535 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 KIAA1257Q9ULG3 409 aa19.45■□□□□ 0.7
CLN3-263ENST00000637871 DERAQ9Y315 318 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms