RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 EHD2Q9NZN4 543 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 KIAA1257Q9ULG3 409 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 L1RE1Q9UN81 338 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.9■□□□□ 0.46
CLN3-252ENST00000636907 KCNK3O14649 394 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 FGFR1P11362 822 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 MNX1P50219 401 aaPredicted RBP17.9■□□□□ 0.46
CLN3-252ENST00000636907 CNGA2Q16280 664 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 TEX35Q5T0J7 233 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 DPH6Q7L8W6 267 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 UNC93AQ86WB7 457 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 C12orf29Q8N999 325 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 SMARCAL1Q9NZC9 954 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 CYTH4Q9UIA0 394 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 C9IYK1 514 aa17.89■□□□□ 0.45
CLN3-252ENST00000636907 HCRTO43612 131 aa17.89■□□□□ 0.45
CLN3-252ENST00000636907 PQBP1O60828 265 aaKnown RBP17.89■□□□□ 0.45
CLN3-252ENST00000636907 CALB1P05937 261 aa17.89■□□□□ 0.45
CLN3-252ENST00000636907 CLCNKBP51801 687 aa17.89■□□□□ 0.45
CLN3-252ENST00000636907 ATN1P54259 1190 aaPredicted RBP17.89■□□□□ 0.45
CLN3-252ENST00000636907 MAMLD1Q13495 774 aa17.89■□□□□ 0.45
CLN3-252ENST00000636907 PLEKHA7Q6IQ23 1121 aa17.89■□□□□ 0.45
CLN3-252ENST00000636907 ACOT1Q86TX2 421 aa17.89■□□□□ 0.45
CLN3-252ENST00000636907 ERICH1Q86X53 443 aa17.89■□□□□ 0.45
CLN3-252ENST00000636907 APPL2Q8NEU8 664 aa17.89■□□□□ 0.45
CLN3-252ENST00000636907 MS4A14Q96JA4 679 aa17.89■□□□□ 0.45
CLN3-252ENST00000636907 TRIM7Q9C029 511 aa17.89■□□□□ 0.45
CLN3-252ENST00000636907 UBN1Q9NPG3 1134 aa17.89■□□□□ 0.45
CLN3-252ENST00000636907 ANAPC7Q9UJX3 599 aa17.89■□□□□ 0.45
CLN3-252ENST00000636907 CASTOR2A6NHX0 329 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 M0QYV0 167 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 PODXLO00592 558 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 DDX3YO15523 660 aaKnown RBP17.88■□□□□ 0.45
CLN3-252ENST00000636907 HUS1O60921 280 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 NBNO60934 754 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 POMCP01189 267 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 COMTP21964 271 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 C1QTNF8P60827 252 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 GPNMBQ14956 572 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 CCDC181Q5TID7 509 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 LCLAT1Q6UWP7 414 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 CPNE8Q86YQ8 564 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 DNAJC5GQ8N7S2 189 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 CRISPLD2Q9H0B8 497 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 DPEP3Q9H4B8 488 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 TSPAN16Q9UKR8 245 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 INPP5FQ9Y2H2 1132 aa17.88■□□□□ 0.45
CLN3-252ENST00000636907 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.88■□□□□ 0.45
CLN3-252ENST00000636907 A8MXQ7 604 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 CES2O00748 559 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 GJB6O95452 261 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 LMO2P25791 158 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 GNL1P36915 607 aaPredicted RBP17.87■□□□□ 0.45
CLN3-252ENST00000636907 GRIK3Q13003 919 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 PTPN20Q4JDL3 420 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 PPP1R26Q5T8A7 1209 aaPredicted RBP17.87■□□□□ 0.45
CLN3-252ENST00000636907 SLC24A5Q71RS6 500 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 ZNF572Q7Z3I7 529 aaPredicted RBP17.87■□□□□ 0.45
CLN3-252ENST00000636907 OSTM1Q86WC4 334 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 ADGRF2Q8IZF7 708 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 PDCL2Q8N4E4 241 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 TOP6BLQ8N6T0 577 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 NOA1Q8NC60 698 aaKnown RBP17.87■□□□□ 0.45
CLN3-252ENST00000636907 C3orf58Q8NDZ4 430 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 UBA3Q8TBC4 463 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 RABGGTAQ92696 567 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 ZNF333Q96JL9 665 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 PBKQ96KB5 322 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 PAAF1Q9BRP4 392 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 MRPL47Q9HD33 250 aaKnown RBP17.87■□□□□ 0.45
CLN3-252ENST00000636907 PARVAQ9NVD7 372 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 SCINQ9Y6U3 715 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 CEP350Q5VT06 3117 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 TCRBV5S1A1TA0A578 114 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 PITPNM1O00562 1244 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 CYB561D2O14569 222 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 PDGFRBP09619 1106 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 WARSP23381 471 aaKnown RBP17.87■□□□□ 0.45
CLN3-252ENST00000636907 RPL9P32969 192 aaKnown RBP17.87■□□□□ 0.45
CLN3-252ENST00000636907 GPD2P43304 727 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 FAM189BP81408 668 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 UPP1Q16831 310 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 GOLGA7BQ2TAP0 167 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 CFAP221Q4G0U5 840 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 CYP4A22Q5TCH4 519 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 SLC39A5Q6ZMH5 540 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 CTU1Q7Z7A3 348 aaKnown RBP17.87■□□□□ 0.45
CLN3-252ENST00000636907 RPGRIP1Q96KN7 1286 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 LPIN3Q9BQK8 851 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 FTHL17Q9BXU8 183 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 EPC1Q9H2F5 836 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 SNX25Q9H3E2 840 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 RNF14Q9UBS8 474 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 TJP2Q9UDY2 1190 aa17.87■□□□□ 0.45
CLN3-252ENST00000636907 INPPL1O15357 1258 aa17.86■□□□□ 0.45
CLN3-252ENST00000636907 EOMESO95936 686 aa17.86■□□□□ 0.45
CLN3-252ENST00000636907 PAFAH1B1P43034 410 aa17.86■□□□□ 0.45
CLN3-252ENST00000636907 C2orf54Q08AI8 447 aa17.86■□□□□ 0.45
CLN3-252ENST00000636907 STILQ15468 1287 aa17.86■□□□□ 0.45
CLN3-252ENST00000636907 PLEKHG4Q58EX7 1191 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms