RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 M0QZQ0 153 aa15.06■□□□□ 0
CLN3-242ENST00000635958 CYB561D2O14569 222 aa15.06■□□□□ 0
CLN3-242ENST00000635958 MAP2K7O14733 419 aa15.06■□□□□ 0
CLN3-242ENST00000635958 ZNF263O14978 683 aa15.06■□□□□ 0
CLN3-242ENST00000635958 AKR1B10O60218 316 aa15.06■□□□□ 0
CLN3-242ENST00000635958 HUS1O60921 280 aa15.06■□□□□ 0
CLN3-242ENST00000635958 FAM228BP0C875 321 aa15.06■□□□□ 0
CLN3-242ENST00000635958 CHRNB2P17787 502 aa15.06■□□□□ 0
CLN3-242ENST00000635958 RAD23BP54727 409 aa15.06■□□□□ 0
CLN3-242ENST00000635958 EPHB4P54760 987 aa15.06■□□□□ 0
CLN3-242ENST00000635958 DEFB103AP81534 67 aa15.06■□□□□ 0
CLN3-242ENST00000635958 CDR2Q01850 454 aa15.06■□□□□ 0
CLN3-242ENST00000635958 PSRC1Q6PGN9 363 aaPredicted RBP15.06■□□□□ 0
CLN3-242ENST00000635958 VPS36Q86VN1 386 aa15.06■□□□□ 0
CLN3-242ENST00000635958 LRRC43Q8N309 656 aa15.06■□□□□ 0
CLN3-242ENST00000635958 SPATA18Q8TC71 538 aa15.06■□□□□ 0
CLN3-242ENST00000635958 KBTBD7Q8WVZ9 684 aa15.06■□□□□ 0
CLN3-242ENST00000635958 MRPL45Q9BRJ2 306 aaKnown RBP15.06■□□□□ 0
CLN3-242ENST00000635958 FUT8Q9BYC5 575 aa15.06■□□□□ 0
CLN3-242ENST00000635958 DEF6Q9H4E7 631 aa15.06■□□□□ 0
CLN3-242ENST00000635958 ACP6Q9NPH0 428 aa15.06■□□□□ 0
CLN3-242ENST00000635958 CWC15Q9P013 229 aaKnown RBP15.06■□□□□ 0
CLN3-242ENST00000635958 DNAJB4Q9UDY4 337 aa15.06■□□□□ 0
CLN3-242ENST00000635958 NENFQ9UMX5 172 aa15.06■□□□□ 0
CLN3-242ENST00000635958 DDX3XO00571 662 aaKnown RBP eCLIP15.05■□□□□ -03e-8■■■□□ 15.1
CLN3-242ENST00000635958 GABRDO14764 452 aa15.05■□□□□ -0
CLN3-242ENST00000635958 FANCGO15287 622 aa15.05■□□□□ -0
CLN3-242ENST00000635958 UPP2O95045 317 aa15.05■□□□□ -0
CLN3-242ENST00000635958 ALDH2P05091 517 aa15.05■□□□□ -0
CLN3-242ENST00000635958 WARSP23381 471 aaKnown RBP15.05■□□□□ -0
CLN3-242ENST00000635958 PDE6CP51160 858 aa15.05■□□□□ -0
CLN3-242ENST00000635958 NDST1P52848 882 aa15.05■□□□□ -0
CLN3-242ENST00000635958 TIGD5Q53EQ6 642 aa15.05■□□□□ -0
CLN3-242ENST00000635958 OTOP2Q7RTS6 562 aa15.05■□□□□ -0
CLN3-242ENST00000635958 TMEM86AQ8N2M4 240 aa15.05■□□□□ -0
CLN3-242ENST00000635958 SLC4A11Q8NBS3 891 aa15.05■□□□□ -0
CLN3-242ENST00000635958 SLC20A1Q8WUM9 679 aa15.05■□□□□ -0
CLN3-242ENST00000635958 RPGRIP1Q96KN7 1286 aa15.05■□□□□ -0
CLN3-242ENST00000635958 SUSD3Q96L08 255 aa15.05■□□□□ -0
CLN3-242ENST00000635958 NAPGQ99747 312 aaPredicted RBP15.05■□□□□ -0
CLN3-242ENST00000635958 ELOVL4Q9GZR5 314 aa15.05■□□□□ -0
CLN3-242ENST00000635958 KIAA1257Q9ULG3 409 aa15.05■□□□□ -0
CLN3-242ENST00000635958 REXO2Q9Y3B8 237 aaKnown RBP15.05■□□□□ -0
CLN3-242ENST00000635958 COL4A6Q14031 1691 aa15.04■□□□□ -0
CLN3-242ENST00000635958 KIF4AO95239 1232 aa15.04■□□□□ -0
CLN3-242ENST00000635958 CYP11A1P05108 521 aa15.04■□□□□ -0
CLN3-242ENST00000635958 TNFAIP3P21580 790 aa15.04■□□□□ -0
CLN3-242ENST00000635958 GNA15P30679 374 aa15.04■□□□□ -0
CLN3-242ENST00000635958 KRT83P78385 493 aa15.04■□□□□ -0
CLN3-242ENST00000635958 FMO1Q01740 532 aa15.04■□□□□ -0
CLN3-242ENST00000635958 GFPT1Q06210 699 aaPredicted RBP15.04■□□□□ -0
CLN3-242ENST00000635958 LONRF2Q1L5Z9 754 aa15.04■□□□□ -0
CLN3-242ENST00000635958 PRPF38BQ5VTL8 546 aaKnown RBP15.04■□□□□ -0
CLN3-242ENST00000635958 CRYBG2Q8N1P7 616 aa15.04■□□□□ -0
CLN3-242ENST00000635958 LNX1Q8TBB1 728 aaPredicted RBP15.04■□□□□ -0
CLN3-242ENST00000635958 ZNF606Q8WXB4 792 aa15.04■□□□□ -0
CLN3-242ENST00000635958 HERVK_113Q902F9 699 aa15.04■□□□□ -0
CLN3-242ENST00000635958 TMEM176AQ96HP8 235 aa15.04■□□□□ -0
CLN3-242ENST00000635958 TWNKQ96RR1 684 aa15.04■□□□□ -0
CLN3-242ENST00000635958 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.04■□□□□ -03e-6■□□□□ 10.1
CLN3-242ENST00000635958 NT5C1AQ9BXI3 368 aa15.04■□□□□ -0
CLN3-242ENST00000635958 ARHGEF37A1IGU5 675 aa15.03■□□□□ -0
CLN3-242ENST00000635958 NRP1O14786 923 aa15.03■□□□□ -0
CLN3-242ENST00000635958 GALTP07902 379 aa15.03■□□□□ -0
CLN3-242ENST00000635958 SYN1P17600 705 aa15.03■□□□□ -0
CLN3-242ENST00000635958 OAS2P29728 719 aaKnown RBP15.03■□□□□ -0
CLN3-242ENST00000635958 GNL1P36915 607 aaPredicted RBP15.03■□□□□ -0
CLN3-242ENST00000635958 OR1G1P47890 313 aa15.03■□□□□ -0
CLN3-242ENST00000635958 SPA17Q15506 151 aa15.03■□□□□ -0
CLN3-242ENST00000635958 ZNF394Q53GI3 561 aa15.03■□□□□ -0
CLN3-242ENST00000635958 C10orf76Q5T2E6 689 aa15.03■□□□□ -0
CLN3-242ENST00000635958 DSTYKQ6XUX3 929 aa15.03■□□□□ -0
CLN3-242ENST00000635958 GLYCTKQ8IVS8 523 aa15.03■□□□□ -0
CLN3-242ENST00000635958 CMTR2Q8IYT2 770 aaKnown RBP15.03■□□□□ -0
CLN3-242ENST00000635958 DPF3Q92784 378 aa15.03■□□□□ -0
CLN3-242ENST00000635958 DESI2Q9BSY9 194 aa15.03■□□□□ -0
CLN3-242ENST00000635958 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.03■□□□□ -0
CLN3-242ENST00000635958 COLEC11Q9BWP8 271 aa15.03■□□□□ -0
CLN3-242ENST00000635958 CWH43Q9H720 699 aa15.03■□□□□ -0
CLN3-242ENST00000635958 HMGXB4Q9UGU5 601 aa15.03■□□□□ -0
CLN3-242ENST00000635958 NAGPAQ9UK23 515 aa15.03■□□□□ -0
CLN3-242ENST00000635958 STXBP5LQ9Y2K9 1186 aa15.03■□□□□ -0
CLN3-242ENST00000635958 NME7Q9Y5B8 376 aa15.03■□□□□ -0
CLN3-242ENST00000635958 CTAGE15A4D2H0 777 aa15.03■□□□□ -0
CLN3-242ENST00000635958 IPO7O95373 1038 aaKnown RBP15.03■□□□□ -0
CLN3-242ENST00000635958 ITGB1P05556 798 aa15.03■□□□□ -0
CLN3-242ENST00000635958 CTAGE8P0CG41 777 aa15.03■□□□□ -0
CLN3-242ENST00000635958 GZMAP12544 262 aa15.03■□□□□ -0
CLN3-242ENST00000635958 LHX1P48742 406 aa15.03■□□□□ -0
CLN3-242ENST00000635958 SLC11A1P49279 550 aa15.03■□□□□ -0
CLN3-242ENST00000635958 ZNF569Q5MCW4 686 aa15.03■□□□□ -0
CLN3-242ENST00000635958 WSCD1Q658N2 575 aa15.03■□□□□ -0
CLN3-242ENST00000635958 ALKBH5Q6P6C2 394 aaKnown RBP15.03■□□□□ -0
CLN3-242ENST00000635958 CTAGE6Q86UF2 777 aa15.03■□□□□ -0
CLN3-242ENST00000635958 CTAGE4Q8IX94 777 aa15.03■□□□□ -0
CLN3-242ENST00000635958 ADGRF2Q8IZF7 708 aa15.03■□□□□ -0
CLN3-242ENST00000635958 ACRBPQ8NEB7 543 aa15.03■□□□□ -0
CLN3-242ENST00000635958 PCDHB18PQ96TA0 734 aa15.03■□□□□ -0
CLN3-242ENST00000635958 ZSWIM1Q9BR11 485 aa15.03■□□□□ -0
CLN3-242ENST00000635958 DSEQ9UL01 958 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms