RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 GJB1P08034 283 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 CBSLP0DN79 551 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 PCSK6P29122 969 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 CBSP35520 551 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 ZNF135P52742 658 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-208ENST00000625916 C3orf36Q3SXR2 165 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 AARS2Q5JTZ9 985 aaKnown RBP3.92□□□□□ -1.78
SCN1A-208ENST00000625916 ZNF618Q5T7W0 954 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 AWAT2Q6E213 333 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 ANKRD16Q6P6B7 361 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 ZNF517Q6ZMY9 492 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-208ENST00000625916 JADE3Q92613 823 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 KAT5Q92993 513 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 VRK1Q99986 396 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-208ENST00000625916 CNPPD1Q9BV87 410 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 SPRTNQ9H040 489 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-208ENST00000625916 SLAMF7Q9NQ25 335 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 GNL3LQ9NVN8 582 aaKnown RBP3.92□□□□□ -1.78
SCN1A-208ENST00000625916 MKS1Q9NXB0 559 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 CFAP97Q9P2B7 532 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 LIMCH1Q9UPQ0 1083 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 IPPQ9Y573 584 aa3.92□□□□□ -1.78
SCN1A-208ENST00000625916 F2RL2O00254 374 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 ZNF213O14771 459 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 PPM1DO15297 605 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 DNAJB5O75953 348 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 PDHA1P08559 390 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 MALP21145 153 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 C5AR1P21730 350 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 SMARCA1P28370 1054 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 TKTP29401 623 aaKnown RBP3.91□□□□□ -1.78
SCN1A-208ENST00000625916 CYP2C19P33261 490 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 EEFSECP57772 596 aaKnown RBP3.91□□□□□ -1.78
SCN1A-208ENST00000625916 HABP2Q14520 560 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-208ENST00000625916 ZNF260Q3ZCT1 412 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 KHDC1Q4VXA5 237 aaKnown RBP3.91□□□□□ -1.78
SCN1A-208ENST00000625916 PCID2Q5JVF3 399 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 PXDC1Q5TGL8 231 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 VPS53Q5VIR6 699 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 CRELD2Q6UXH1 353 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-208ENST00000625916 HMCESQ96FZ2 354 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 PRSS22Q9GZN4 317 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 SIK2Q9H0K1 926 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 VPS16Q9H269 839 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 RLIMQ9NVW2 624 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 SIDT1Q9NXL6 827 aaKnown RBP3.91□□□□□ -1.78
SCN1A-208ENST00000625916 TUBA8Q9NY65 449 aaPredicted RBP3.91□□□□□ -1.78
SCN1A-208ENST00000625916 RAD54BQ9Y620 910 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 CNTNAP2Q9UHC6 1331 aa3.91□□□□□ -1.78
SCN1A-208ENST00000625916 SMIM35A0A1B0GVV1 85 aa3.9□□□□□ -1.79
SCN1A-208ENST00000625916 H0YIZ8 118 aa3.9□□□□□ -1.79
SCN1A-208ENST00000625916 SNHG28P0DPA3 235 aa3.9□□□□□ -1.79
SCN1A-208ENST00000625916 CYP2C18P33260 490 aa3.9□□□□□ -1.79
SCN1A-208ENST00000625916 ARHGAP25P42331 645 aa3.9□□□□□ -1.79
SCN1A-208ENST00000625916 FOXG1P55316 489 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-208ENST00000625916 KRTAP10-7P60409 375 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-208ENST00000625916 KIF23Q02241 960 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-208ENST00000625916 RABEP1Q15276 862 aa3.9□□□□□ -1.79
SCN1A-208ENST00000625916 KLHL22Q53GT1 634 aa3.9□□□□□ -1.79
SCN1A-208ENST00000625916 SLC4A10Q6U841 1118 aa3.9□□□□□ -1.79
SCN1A-208ENST00000625916 WDR53Q7Z5U6 358 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-208ENST00000625916 PNLDC1Q8NA58 520 aaKnown RBP3.9□□□□□ -1.79
SCN1A-208ENST00000625916 DMRTA2Q96SC8 542 aa3.9□□□□□ -1.79
SCN1A-208ENST00000625916 SERHLQ9NQF3 203 aa3.9□□□□□ -1.79
SCN1A-208ENST00000625916 MRPS18AQ9NVS2 196 aaKnown RBP3.9□□□□□ -1.79
SCN1A-208ENST00000625916 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 KLHL33A6NCF5 533 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 MYO1FO00160 1098 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 XPOTO43592 962 aaKnown RBP3.89□□□□□ -1.79
SCN1A-208ENST00000625916 KIF20AO95235 890 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 SFPQP23246 707 aaKnown RBP eCLIP3.89□□□□□ -1.79
SCN1A-208ENST00000625916 EDNRBP24530 442 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 HSD3B2P26439 372 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 CCKBRP32239 447 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 IARSP41252 1262 aaKnown RBP3.89□□□□□ -1.79
SCN1A-208ENST00000625916 NR4A2P43354 598 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 PHKA1P46020 1223 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 GCLCP48506 637 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-208ENST00000625916 SNAPC2Q13487 334 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 LAMB3Q13751 1172 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 RUSC1-AS1Q66K80 236 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 MIS18BP1Q6P0N0 1132 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 NAPRTQ6XQN6 538 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 CATSPERGQ6ZRH7 1159 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 TTC7BQ86TV6 843 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 FAM109AQ8N4B1 249 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 CNTD1Q8N815 330 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 C5orf34Q96MH7 638 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 CAMKK2Q96RR4 588 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 GPR35Q9HC97 309 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 DLL3Q9NYJ7 618 aa3.89□□□□□ -1.79
SCN1A-208ENST00000625916 CFAP20Q9Y6A4 193 aaKnown RBP3.89□□□□□ -1.79
SCN1A-208ENST00000625916 H3BNC9 293 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 SLC16A3O15427 465 aaKnown RBP3.88□□□□□ -1.79
SCN1A-208ENST00000625916 INSIG1O15503 277 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 TLR5O60602 858 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 MT-CO1P00395 513 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 RARBP10826 455 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 ENGP17813 658 aa3.88□□□□□ -1.79
SCN1A-208ENST00000625916 CLCN2P51788 898 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms