RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ATP2A1O14983 1001 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 HNRNPRO43390 633 aaKnown RBP11.38□□□□□ -0.59
UPF3A-212ENST00000619079 RAD21O60216 631 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 PLS3P13797 630 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 ETS2P15036 469 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 ABCD1P33897 745 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 NOVP48745 357 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 VPS41P49754 854 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 CCNG2Q16589 344 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.38□□□□□ -0.59
UPF3A-212ENST00000619079 TMCO4Q5TGY1 634 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 PRAMEF18Q5VWM3 479 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 C16orf86Q6ZW13 317 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 LRRC6Q86X45 466 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 SCUBE1Q8IWY4 988 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 OR6Y1Q8NGX8 325 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 RFWD2Q8NHY2 731 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 ATG4AQ8WYN0 398 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 HAUS1Q96CS2 278 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 TSSK1BQ9BXA7 367 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 TMEM39BQ9GZU3 492 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 MANSC1Q9H8J5 431 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 SAYSD1Q9NPB0 183 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 TIMMDC1Q9NPL8 285 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 ETNK2Q9NVF9 386 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 POLIQ9UNA4 740 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 CYP3A7-CYP3A51PA0A087WV96 503 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 TBX3O15119 743 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 P4HA2O15460 535 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 RNASEH1O60930 286 aaKnown RBP11.38□□□□□ -0.59
UPF3A-212ENST00000619079 TM7SF2O76062 418 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 IL1BP01584 269 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 AMPD1P23109 780 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 CYP3A7P24462 503 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 CCNFP41002 786 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 INHBCP55103 352 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 HPCAP84074 193 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 MAPK6Q16659 721 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 MPP4Q96JB8 637 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 PWWP2AQ96N64 755 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 RUSC1Q9BVN2 902 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 UBE2TQ9NPD8 197 aaPredicted RBP11.38□□□□□ -0.59
UPF3A-212ENST00000619079 NUMBLQ9Y6R0 609 aa11.38□□□□□ -0.59
UPF3A-212ENST00000619079 KRT4P19013 534 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 CDK8P49336 464 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 CLCN2P51788 898 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 BPIFB4P59827 614 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 DEUP1Q05D60 604 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 BFSP1Q12934 665 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 TBCCQ15814 346 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 HSP90AA5PQ58FG0 334 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 PCNX4Q63HM2 1172 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 DLK2Q6UY11 383 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 B3GNT6Q6ZMB0 384 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 RIPOR1Q6ZS17 1223 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 PRUNE1Q86TP1 453 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 RASSF3Q86WH2 238 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 CEP95Q96GE4 821 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 OXNAD1Q96HP4 312 aaPredicted RBP11.37□□□□□ -0.59
UPF3A-212ENST00000619079 FAM81BQ96LP2 452 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 MBOAT7Q96N66 472 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 POLR3CQ9BUI4 534 aaPredicted RBP11.37□□□□□ -0.59
UPF3A-212ENST00000619079 TMEM120AQ9BXJ8 343 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 IDI2Q9BXS1 227 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 PSTPIP2Q9H939 334 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 DDX4Q9NQI0 724 aaKnown RBP11.37□□□□□ -0.59
UPF3A-212ENST00000619079 SAP30BPQ9UHR5 308 aaKnown RBP11.37□□□□□ -0.59
UPF3A-212ENST00000619079 A6NJR5 290 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 AP1G1O43747 822 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 STRNO43815 780 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 LGR5O75473 907 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 FAM13AO94988 1023 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 TRIM49P0CI25 452 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 TRIM49CP0CI26 452 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 FGFR1P11362 822 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 IRX4P78413 519 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 PTP4A2Q12974 167 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 CYLC2Q14093 348 aaPredicted RBP11.37□□□□□ -0.59
UPF3A-212ENST00000619079 MYBPC2Q14324 1141 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 Q4G0T1 1027 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 ZNF746Q6NUN9 644 aaPredicted RBP11.37□□□□□ -0.59
UPF3A-212ENST00000619079 PDSS2Q86YH6 399 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 EPS8L1Q8TE68 723 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 VPS37BQ9H9H4 285 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 DMAC2Q9NW81 257 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 RHBDL2Q9NX52 303 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 SEL1LQ9UBV2 794 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 FAM198AQ9UFP1 575 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 PGAP2Q9UHJ9 254 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 NAV1Q8NEY1 1877 aa11.37□□□□□ -0.59
UPF3A-212ENST00000619079 B2RBV5 119 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 FCHO1O14526 889 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 ATMINO43313 823 aaPredicted RBP11.36□□□□□ -0.59
UPF3A-212ENST00000619079 BAG2O95816 211 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 ATP5BP06576 529 aaKnown RBP11.36□□□□□ -0.59
UPF3A-212ENST00000619079 UQCRBP14927 111 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 ADRA1DP25100 572 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 STAT3P40763 770 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 PIK3CAP42336 1068 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 GEMIN4P57678 1058 aaKnown RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms