RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 MFAP3LO75121 409 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 URODP06132 367 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 PAEPP09466 180 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 PDGFRBP09619 1106 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 PNMA6AP0CW24 399 aaPredicted RBP15.3■□□□□ 0.04
UPF1-211ENST00000600868 CTSAP10619 480 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 LAMA2P24043 3122 aaKnown RBP15.3■□□□□ 0.04
UPF1-211ENST00000600868 HNRNPH3P31942 346 aaKnown RBP15.3■□□□□ 0.04
UPF1-211ENST00000600868 USP8P40818 1118 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 BPIFB4P59827 614 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 SFMBT2Q5VUG0 894 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 ZNF280DQ6N043 979 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 SLC4A11Q8NBS3 891 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 OR8K1Q8NGG5 319 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 RIN2Q8WYP3 895 aaPredicted RBP15.3■□□□□ 0.04
UPF1-211ENST00000600868 TMEM176AQ96HP8 235 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 PDLIM2Q96JY6 352 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 TNIP3Q96KP6 325 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 TWNKQ96RR1 684 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 DNAJC7Q99615 494 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 ELOVL4Q9GZR5 314 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 MTRRQ9UBK8 725 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 HMGXB4Q9UGU5 601 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 CDH9Q9ULB4 789 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 KIAA1257Q9ULG3 409 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 SSX2IPQ9Y2D8 614 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 BACE2Q9Y5Z0 518 aa15.3■□□□□ 0.04
UPF1-211ENST00000600868 CHD9Q3L8U1 2897 aa15.29■□□□□ 0.04
UPF1-211ENST00000600868 OR6C75A6NL08 312 aa15.29■□□□□ 0.04
UPF1-211ENST00000600868 CYP26A1O43174 497 aa15.29■□□□□ 0.04
UPF1-211ENST00000600868 LILRB3O75022 631 aa15.29■□□□□ 0.04
UPF1-211ENST00000600868 GFPT2O94808 682 aa15.29■□□□□ 0.04
UPF1-211ENST00000600868 CCDC172P0C7W6 258 aa15.29■□□□□ 0.04
UPF1-211ENST00000600868 FERP16591 822 aa15.29■□□□□ 0.04
UPF1-211ENST00000600868 CLCN1P35523 988 aa15.29■□□□□ 0.04
UPF1-211ENST00000600868 GPM6BQ13491 265 aa15.29■□□□□ 0.04
UPF1-211ENST00000600868 BMS1Q14692 1282 aaKnown RBP15.29■□□□□ 0.04
UPF1-211ENST00000600868 PSMD5Q16401 504 aa15.29■□□□□ 0.04
UPF1-211ENST00000600868 CTXN3Q4LDR2 81 aa15.29■□□□□ 0.04
UPF1-211ENST00000600868 ZNF394Q53GI3 561 aa15.29■□□□□ 0.04
UPF1-211ENST00000600868 TC2NQ8N9U0 490 aa15.29■□□□□ 0.04
UPF1-211ENST00000600868 POF1BQ8WVV4 589 aa15.29■□□□□ 0.04
UPF1-211ENST00000600868 SYT15Q9BQS2 421 aa15.29■□□□□ 0.04
UPF1-211ENST00000600868 TLR9Q9NR96 1032 aa15.29■□□□□ 0.04
UPF1-211ENST00000600868 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.29■□□□□ 0.04
UPF1-211ENST00000600868 MRPL17Q9NRX2 175 aaKnown RBP15.29■□□□□ 0.04
UPF1-211ENST00000600868 TMEM265A0A087WTH1 108 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 FSCN2O14926 492 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 GRM6O15303 877 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 HCRTO43612 131 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 PTPN1P18031 435 aaKnown RBP15.28■□□□□ 0.04
UPF1-211ENST00000600868 ADKP55263 362 aaKnown RBP15.28■□□□□ 0.04
UPF1-211ENST00000600868 GSDMDP57764 484 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 TSPY1Q01534 308 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 CREMQ03060 361 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 PTK2Q05397 1052 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 PTPN14Q15678 1187 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 ASIC2Q16515 512 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 TSR1Q2NL82 804 aaKnown RBP15.28■□□□□ 0.04
UPF1-211ENST00000600868 INTS6LQ5JSJ4 861 aaKnown RBP15.28■□□□□ 0.04
UPF1-211ENST00000600868 PDE12Q6L8Q7 609 aaKnown RBP15.28■□□□□ 0.04
UPF1-211ENST00000600868 PRSS55Q6UWB4 352 aaPredicted RBP15.28■□□□□ 0.04
UPF1-211ENST00000600868 TMC7Q7Z402 723 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 IRF2BP2Q7Z5L9 587 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 ACOT1Q86TX2 421 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 B3GALNT2Q8NCR0 500 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 OR10T2Q8NGX3 314 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 ARNTL2Q8WYA1 636 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 ZCWPW1Q9H0M4 648 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 LMAN2LQ9H0V9 348 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 DPEP3Q9H4B8 488 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 RXFP1Q9HBX9 757 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 NGRNQ9NPE2 291 aaKnown RBP15.28■□□□□ 0.04
UPF1-211ENST00000600868 ABHD10Q9NUJ1 306 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 FNIP2Q9P278 1114 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 IRAK3Q9Y616 596 aa15.28■□□□□ 0.04
UPF1-211ENST00000600868 C2CD2LO14523 706 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 CXCL14O95715 111 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 VDRP11473 427 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 CYP11B1P15538 503 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 ACAT1P24752 427 aaKnown RBP15.27■□□□□ 0.04
UPF1-211ENST00000600868 DNAJB1P25685 340 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 PRKCIP41743 596 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 ERVFC1P60507 584 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 ARID5AQ03989 594 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 GOLGA8FQ08AF8 430 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 GOLGA8DPQ0D2H9 430 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 ORC1Q13415 861 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 CAMK1Q14012 370 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 SMC1AQ14683 1233 aaKnown RBP15.27■□□□□ 0.04
UPF1-211ENST00000600868 MAPRE1Q15691 268 aaKnown RBP15.27■□□□□ 0.04
UPF1-211ENST00000600868 E4F1Q66K89 784 aaPredicted RBP15.27■□□□□ 0.04
UPF1-211ENST00000600868 SLC8B1Q6J4K2 584 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 FAM171BQ6P995 826 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 SLC47A2Q86VL8 602 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 DCP1BQ8IZD4 617 aaKnown RBP15.27■□□□□ 0.04
UPF1-211ENST00000600868 MYCBPAPQ8TBZ2 947 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 HEXIM2Q96MH2 286 aaKnown RBP15.27■□□□□ 0.04
UPF1-211ENST00000600868 PANX2Q96RD6 677 aa15.27■□□□□ 0.04
UPF1-211ENST00000600868 PKMYT1Q99640 499 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms