RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CRTAC1Q9NQ79 661 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 SAMSN1Q9NSI8 373 aaKnown RBP15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 HCFC1R1Q9NWW0 138 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 RAB20Q9NX57 234 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 GTF3C4Q9UKN8 822 aa15.22■□□□□ 0.03
SHKBP1-217ENST00000598558 ARHGEF37A1IGU5 675 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 GNL1P36915 607 aaPredicted RBP15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 LHX1P48742 406 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 FMO5P49326 533 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 PSMC1P62191 440 aaKnown RBP15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 TNNC1P63316 161 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 TYRO3Q06418 890 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 KCNH2Q12809 1159 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 CBX2Q14781 532 aaPredicted RBP15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 UVSSAQ2YD98 709 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 PUS10Q3MIT2 529 aaKnown RBP15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 INTS6LQ5JSJ4 861 aaKnown RBP15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 PPM1LQ5SGD2 360 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 FAM171BQ6P995 826 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 POTEHQ6S545 545 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 SASS6Q6UVJ0 657 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 FBXL13Q8NEE6 735 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 SMG7Q92540 1137 aaKnown RBP15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 TAF4BQ92750 862 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 FUCA2Q9BTY2 467 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 OXCT2Q9BYC2 517 aaPredicted RBP15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 BCO2Q9BYV7 579 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 RHOBTB2Q9BYZ6 727 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 ZDHHC7Q9NXF8 308 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 CEP72Q9P209 647 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 DNMT3BQ9UBC3 853 aaKnown RBP15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 HMGXB4Q9UGU5 601 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 INSL5Q9Y5Q6 135 aa15.21■□□□□ 0.03
SHKBP1-217ENST00000598558 TSC2P49815 1807 aa15.2■□□□□ 0.02
SHKBP1-217ENST00000598558 GNA14O95837 355 aa15.2■□□□□ 0.02
SHKBP1-217ENST00000598558 FAM163BP0C2L3 166 aa15.2■□□□□ 0.02
SHKBP1-217ENST00000598558 NOP14P78316 857 aaKnown RBP15.2■□□□□ 0.02
SHKBP1-217ENST00000598558 MYL7Q01449 175 aa15.2■□□□□ 0.02
SHKBP1-217ENST00000598558 ORC1Q13415 861 aa15.2■□□□□ 0.02
SHKBP1-217ENST00000598558 ATAT1Q5SQI0 421 aa15.2■□□□□ 0.02
SHKBP1-217ENST00000598558 LIN9Q5TKA1 542 aa15.2■□□□□ 0.02
SHKBP1-217ENST00000598558 OR6B3Q8NGW1 331 aa15.2■□□□□ 0.02
SHKBP1-217ENST00000598558 SPATA18Q8TC71 538 aa15.2■□□□□ 0.02
SHKBP1-217ENST00000598558 ENOX1Q8TC92 643 aaKnown RBP15.2■□□□□ 0.02
SHKBP1-217ENST00000598558 ADAMTS19Q8TE59 1207 aa15.2■□□□□ 0.02
SHKBP1-217ENST00000598558 TWNKQ96RR1 684 aa15.2■□□□□ 0.02
SHKBP1-217ENST00000598558 SYT15Q9BQS2 421 aa15.2■□□□□ 0.02
SHKBP1-217ENST00000598558 DNAJC25Q9H1X3 360 aa15.2■□□□□ 0.02
SHKBP1-217ENST00000598558 SPDYE4A6NLX3 237 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 PRRG1O14668 218 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 PMM2O15305 246 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 STX10O60499 249 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 N4BP1O75113 896 aaKnown RBP15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 HNRNPA1P09651 372 aaKnown RBP eCLIP15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 SP100P23497 879 aaPredicted RBP15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 HOXA9P31269 272 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 ELF1P32519 619 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 GPR15P49685 360 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 ZP2Q05996 745 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 TWF1Q12792 350 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 LRMPQ12912 555 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 NCAPHQ15003 741 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 CT47A1Q5JQC4 288 aaPredicted RBP15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 CES5AQ6NT32 575 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 CCDC149Q6ZUS6 474 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 GRASPQ7Z6J2 395 aaPredicted RBP15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 CREBRFQ8IUR6 639 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 HS6ST3Q8IZP7 471 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 WHAMMQ8TF30 809 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 ARID3AQ99856 593 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 COL25A1Q9BXS0 654 aaPredicted RBP15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 SNX25Q9H3E2 840 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 THAP9Q9H5L6 903 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 ANO10Q9NW15 660 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 DPP7Q9UHL4 492 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 DACH1Q9UI36 760 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 CDH9Q9ULB4 789 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 YIPF1Q9Y548 306 aa15.19■□□□□ 0.02
SHKBP1-217ENST00000598558 C19orf67A6NJJ6 358 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 A8MXQ7 604 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 FGFR1OPO95684 399 aaKnown RBP15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 CCDC192P0DO97 292 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 HAPLN1P10915 354 aaPredicted RBP15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 PTPN1P18031 435 aaKnown RBP15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 CYP2F1P24903 491 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 PCSK1P29120 753 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 MTHFRP42898 656 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 NDST1P52848 882 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 STX1AQ16623 288 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 SDHAF4Q5VUM1 108 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 DCP1BQ8IZD4 617 aaKnown RBP15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 STKLD1Q8NE28 680 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 ITFG1Q8TB96 612 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 KAT5Q92993 513 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 RIPOR3Q96MK2 946 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 PHF7Q9BWX1 381 aaPredicted RBP15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 LRRC3Q9BY71 257 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 NIF3L1Q9GZT8 377 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 HSD3B7Q9H2F3 369 aa15.18■□□□□ 0.02
SHKBP1-217ENST00000598558 WDR6Q9NNW5 1121 aaKnown RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms