RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 INTS6LQ5JSJ4 861 aaKnown RBP17.31■□□□□ 0.36
TRIM28-213ENST00000598355 TMC8Q8IU68 726 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 NPAS3Q8IXF0 933 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 ITFG1Q8TB96 612 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 SYAP1Q96A49 352 aaPredicted RBP17.31■□□□□ 0.36
TRIM28-213ENST00000598355 LRRC3Q9BY71 257 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 TMLHEQ9NVH6 421 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 DDX43Q9NXZ2 648 aaKnown RBP17.31■□□□□ 0.36
TRIM28-213ENST00000598355 IGSF9Q9P2J2 1179 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 CDH7Q9ULB5 785 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 PATJQ8NI35 1801 aa17.31■□□□□ 0.36
TRIM28-213ENST00000598355 COL4A2P08572 1712 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 ASGR2P07307 311 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 CD44P16070 742 aaKnown RBP17.3■□□□□ 0.36
TRIM28-213ENST00000598355 PTPN2P17706 415 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 PCSK1P29120 753 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 GBP2P32456 591 aaPredicted RBP17.3■□□□□ 0.36
TRIM28-213ENST00000598355 PSMC2P35998 433 aaKnown RBP17.3■□□□□ 0.36
TRIM28-213ENST00000598355 PPP1R2P41236 205 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 VAMP7P51809 220 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 MYL7Q01449 175 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 TSPY1Q01534 308 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 ADAM9Q13443 819 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 MTMR3Q13615 1198 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 NCOA4Q13772 614 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 SV2AQ7L0J3 742 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 FAM186BQ8IYM0 893 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 DCP1BQ8IZD4 617 aaKnown RBP17.3■□□□□ 0.36
TRIM28-213ENST00000598355 LEMD2Q8NC56 503 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 FGF13Q92913 245 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 NXPE3Q969Y0 559 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 ASIC4Q96FT7 647 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 ABCB6Q9NP58 842 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 LIMD1Q9UGP4 676 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 POLIQ9UNA4 740 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 R3HCC1Q9Y3T6 440 aaKnown RBP17.3■□□□□ 0.36
TRIM28-213ENST00000598355 NME7Q9Y5B8 376 aa17.3■□□□□ 0.36
TRIM28-213ENST00000598355 NRG2O14511 850 aaPredicted RBP17.29■□□□□ 0.36
TRIM28-213ENST00000598355 SLC16A3O15427 465 aaKnown RBP17.29■□□□□ 0.36
TRIM28-213ENST00000598355 HCRTO43612 131 aa17.29■□□□□ 0.36
TRIM28-213ENST00000598355 MOSPD3O75425 235 aa17.29■□□□□ 0.36
TRIM28-213ENST00000598355 ATF6P18850 670 aa17.29■□□□□ 0.36
TRIM28-213ENST00000598355 CCNE1P24864 410 aa17.29■□□□□ 0.36
TRIM28-213ENST00000598355 CCR2P41597 374 aa17.29■□□□□ 0.36
TRIM28-213ENST00000598355 HTR4Q13639 388 aa17.29■□□□□ 0.36
TRIM28-213ENST00000598355 NFE2Q16621 373 aaPredicted RBP17.29■□□□□ 0.36
TRIM28-213ENST00000598355 CFAP221Q4G0U5 840 aa17.29■□□□□ 0.36
TRIM28-213ENST00000598355 FAM171BQ6P995 826 aa17.29■□□□□ 0.36
TRIM28-213ENST00000598355 POTEHQ6S545 545 aa17.29■□□□□ 0.36
TRIM28-213ENST00000598355 UBALD2Q8IYN6 164 aa17.29■□□□□ 0.36
TRIM28-213ENST00000598355 PSMG2Q969U7 264 aa17.29■□□□□ 0.36
TRIM28-213ENST00000598355 KCNK12Q9HB15 430 aa17.29■□□□□ 0.36
TRIM28-213ENST00000598355 ASB3Q9Y575 518 aa17.29■□□□□ 0.36
TRIM28-213ENST00000598355 TRIM49BA6NDI0 452 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 PRR33A8MZF0 331 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 PPP1R3GB7ZBB8 358 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 PSMA7O14818 248 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 ASS1P00966 412 aaKnown RBP17.28■□□□□ 0.36
TRIM28-213ENST00000598355 TRIM49P0CI25 452 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 TRIM49CP0CI26 452 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 HAPLN1P10915 354 aaPredicted RBP17.28■□□□□ 0.36
TRIM28-213ENST00000598355 TUFMP49411 452 aaKnown RBP17.28■□□□□ 0.36
TRIM28-213ENST00000598355 FKBP3Q00688 224 aaKnown RBP17.28■□□□□ 0.36
TRIM28-213ENST00000598355 PPP3CAQ08209 521 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 SIGLEC14Q08ET2 396 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 BIRC3Q13489 604 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 TRPC3Q13507 836 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 CCDC142Q17RM4 750 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 WDR72Q3MJ13 1102 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 TMEM31Q5JXX7 168 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 ANKRD40Q6AI12 368 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 TTI2Q6NXR4 508 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 TRIM67Q6ZTA4 783 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 BMP8AQ7Z5Y6 402 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 ELMOD1Q8N336 334 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 TRIML1Q8N9V2 468 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 TAF4BQ92750 862 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 DHTKD1Q96HY7 919 aaPredicted RBP17.28■□□□□ 0.36
TRIM28-213ENST00000598355 FUBP3Q96I24 572 aaKnown RBP eCLIP17.28■□□□□ 0.36
TRIM28-213ENST00000598355 CORO1BQ9BR76 489 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 LRFN3Q9BTN0 628 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 CDH9Q9ULB4 789 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 DUSP12Q9UNI6 340 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 SLC27A5Q9Y2P5 690 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 MRPS23Q9Y3D9 190 aaKnown RBP17.28■□□□□ 0.36
TRIM28-213ENST00000598355 MYH10P35580 1976 aa17.28■□□□□ 0.36
TRIM28-213ENST00000598355 FAM86C2PA6NEL3 165 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 TULP1O00294 542 aaPredicted RBP17.27■□□□□ 0.36
TRIM28-213ENST00000598355 ZNF197O14709 1029 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 CETN3O15182 167 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 SOAT2O75908 522 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 CEBPBP17676 345 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 ACAT1P24752 427 aaKnown RBP17.27■□□□□ 0.36
TRIM28-213ENST00000598355 LMO2P25791 158 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 GTF2H1P32780 548 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 ALDH1A3P47895 512 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 EPHB3P54753 998 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 TNNC1P63316 161 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 TDGQ13569 410 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 ZNF699Q32M78 642 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms